| Potential function | Interacting transcript | Gene description | Transcript biotype | lncRNA id | Alignment score (LAST) | Alignment length | Transcript region involved in interaction | Genomic orientation of interacting RNAs |
|---|---|---|---|---|---|---|---|---|
| ENST00000524264 | SAP30L antisense RNA 1 (head to head) | antisense | ENST00000397184 | 507 | 232 | noncoding | Trans | |
| ENST00000568559 | transmembrane protein 170A | nonsense mediated decay | ENST00000397184 | 516 | 232 | UTR3 | Trans | |
| ENST00000593250 | centrosomal protein 76kDa | nonsense mediated decay | ENST00000397184 | 541 | 232 | UTR3 | Trans | |
| TCONS_00030130 | calcium/calmodulin-dependent protein kinase II gamma | novel protein coding | ENST00000397184 | 624 | 232 | UTR3 | Trans |
>TCONS_00030130 (595 nt)
TGCTGTAAGGAAGCTCATAGGGAGAGTAGTTCTGTCTGGTGGGCAGGAGAGCAGAAATAGATCAGGAAACTTCATGAAGGAGGTCATTTTTGTAATAGGC
CTTGAAGGATGGGTACGATGAGAATGTACAGGGAATAAACATTTACTCAGTGTAGCTAGAGTATGTGAATGGGAATAATGGAAAATGGATGTGGCACTTT
GGGAGGTTGAGGCGGGTGGATCACCTGAGGTCAGGAGTTCGAGACCAGCCTGGCCAATGTGGTGAAACCCTGTCTCTACAAAAAACACAAAAATTAGCCG
GGCATGGTGGTGGACGCCTGTAATCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATTGCTTGAACCCGGGAGGCAGAGGTTGCAGTGAGCCGAGATTACA
TCACTGCACTCCATCCTGGGCAAGACTCCCTCTCAAAAGAAAAAACCTATGTGATGTTCTAGTTCAAAAGCCTGTGATTCTGGACTGAGTTATCTGGTCT
TAGTGGAGAAAAAAACACCAAAGATCTGCAGTTTATACCGGTGAGGATGGAAAAATTCAGGCTAAAATTAGGGTGCTACTGAGATAAAAGGTAGAA
In silico ORF/peptide predictions
Nothing found.
RiboTaper predictions from Ribo-Seq data (HEK293 cell line)
Nothing found.