Detailed information on ENST00000397184

lncRNA-RNA interactions

Number of interactions: 4

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
ENST00000524264 SAP30L antisense RNA 1 (head to head) antisense ENST00000397184 507 232 noncoding Trans
ENST00000568559 transmembrane protein 170A nonsense mediated decay ENST00000397184 516 232 UTR3 Trans
ENST00000593250 centrosomal protein 76kDa nonsense mediated decay ENST00000397184 541 232 UTR3 Trans
TCONS_00030130 calcium/calmodulin-dependent protein kin... novel protein coding ENST00000397184 624 232 UTR3 Trans

Sequence

>ENST00000397184 (596 nt)
TGCTGTAAGGAAGCTCATAGGGAGAGTAGTTCTGTCTGGTGGGCAGGAGAGCAGAAATAGATCAGGAAACTTCATGAAGGAGGTCATTTTTGTAATAGGC<br />CTTGAAGGATGGGTACGATGAGAATGTACAGGGAATAAACATTTACTCAGTGTAGCTAGAGTATGTGAATGGGAATAATGGAAAATGGATGTGGCACTTT<br />GGGAGGTTGAGGCGGGTGGATCACCTGAGGTCAGGAGTTCGAGACCAGCCTGGCCAATGTGGTGAAACCCTGTCTCTACAAAAAACACAAAAATTAGCCG<br />GGCATGGTGGTGGACGCCTGTAATCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATTGCTTGAACCCGGGAGGCAGAGGTTGCAGTGAGCCGAGATTACA<br />TCACTGCACTCCATCCTGGGCAAGACTCCCTCTCAAAAGAAAAAACCTATGTGATGTTCTAGTTCAAAAGCCTGTGATTCTGGACTGAGTTATCTGGTCT<br />TAGTGGAGAAAAAAACACCAAAGATCTGCAGTTTATACCGGTGAGGATGGAAAAATTCAGGCTAAAATTAGGGTGCTACTGAGATAAAAGGTAGAA

Expression



Full and truncated open reading frames discovered in ENST00000397184

In silico ORF/peptide predictions
Nothing found.


RiboTaper predictions from Ribo-Seq data (HEK293 cell line)
Nothing found.

BLAST search results

Best hit to NONCODE v4:
NONHSAT081968 (Evalue: 0)

Best hit to Swiss-Prot:
sp|Q8N2A0|CX062_HUMAN (Evalue: 1.0E-31)