Detailed information on ENST00000398953

lncRNA-RNA interactions

Number of interactions: 4

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
TCONS_00030591 cytoplasmic polyadenylation element bind... novel protein coding ENST00000398953 619 407 UTR3 Trans
TCONS_00065864 long intergenic non-protein coding RNA 4... novel protein coding ENST00000398953 687 394 UTR3 Trans
TCONS_00095053 epithelial membrane protein 2 novel protein coding ENST00000398953 555 346 UTR3 Trans
TCONS_00195633 aspartylglucosaminidase novel protein coding ENST00000398953 501 256 UTR3 Trans

Sequence

>ENST00000398953 (482 nt)
GGCTGGAGTGCAATAGTGTGATCTCAGCTCACTGCAACCTCCGCCTCCTGGGCTCAAGCAATCCTCTCACCTCAGCCTCCTGAGTAGCTGGGTCTACAGG<br />CGTGCACCACCATGCCCAGCTAATTTTTGTATTTTTTGTAGAGATGAGGTTTTGCCATGTTGGCCAGGCTGGTCTCAAACTCCTGAGCTCAAGTAATCAA<br />CCCACTTCGGCCTCCCAAAGTGCTGGAATTACAGGTGTGAGCCACTGTGCCCGGCCACCTGCCTCCTTTTTTGGGAGGCCGACAGGGTCTCACTCTGTTG<br />GCCAGGCTGGGGGGCAGTGGCGCCATCATAACTCACTGTAGCCTCGACCTCCTGGGCTCAGGCGATCCTCCTGCCTCAGCTTCCCGAGTAGCTGTGTCTC<br />CAGTGGAATCCTTCGAGGAGGTGGAGGACAGCCTGTGTGTCCCCCAGTATAACAAGTACAGGGAGGAGAGGGTGATCCTCTT

Expression



Full and truncated open reading frames discovered in ENST00000398953

In silico ORF/peptide predictions
>peptide 1 (65 aa)
MRFCHVGQAGLKLLSSSNQPTSASQSAGITGVSHCARPPASFFGRPTGSHSVGQAGGQWRHHNSL


RiboTaper predictions from Ribo-Seq data (HEK293 cell line)
Nothing found.

BLAST search results

Best hit to NONCODE v4:
NONHSAT031712 (Evalue: 0)

Best hit to Swiss-Prot:
sp|Q8N2A0|CX062_HUMAN (Evalue: 7.0E-23)