Detailed information on ENST00000411509

lncRNA-RNA interactions

Number of interactions: 13

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
ENST00000441159 family with sequence similarity 115, member C protein coding ENST00000411509 1217 771 UTR3 Trans
TCONS_00023682 pre-mRNA processing factor 18 novel protein coding ENST00000411509 1296 855 UTR3 Trans
TCONS_00023685 pre-mRNA processing factor 18 novel protein coding ENST00000411509 1296 855 UTR3 Trans
TCONS_00023687 pre-mRNA processing factor 18 novel protein coding ENST00000411509 1296 855 UTR3 Trans
TCONS_00023689 pre-mRNA processing factor 18 novel protein coding ENST00000411509 1296 855 UTR3 Trans
TCONS_00148698 WD repeat containing planar cell polarity effector novel noncoding ENST00000411509 936 1356 noncoding Trans
TCONS_00148704 WD repeat containing planar cell polarity effector novel protein coding ENST00000411509 936 1356 UTR3 Trans
TCONS_00148705 WD repeat containing planar cell polarity effector novel protein coding ENST00000411509 936 1356 UTR3 Trans
TCONS_00156217 antisense novel protein coding ENST00000411509 1903 1177 UTR5 Trans
TCONS_00156217 antisense novel protein coding ENST00000411509 1170 768 UTR5 Trans
TCONS_00225245 family with sequence similarity 115, member C novel protein coding ENST00000411509 1355 956 UTR3 Trans
TCONS_00225248 family with sequence similarity 115, member C novel protein coding ENST00000411509 1355 956 UTR3 Trans
TCONS_00252652 lincRNA novel protein coding ENST00000411509 1381 1341 UTR3 Trans

Sequence

>TCONS_00252652 (2462 nt)
CCCTTGTACCCTGGCCAGCGCATGTAGGTGGTGTGACCTGGGAGGACAGCGGAGCCAGGAGCTCCGCAGCTGTGTCAGAAGCCAGGCTCCCAGCGGCAAT
GTTCCAGGGAGCCAAAGGGGGAGCCAGAGAGCCGGGAGGCTCCAGCCTGGTCCAGAGAGAAAGAGACAGCACCTGCCCAAGGCGATTGTGTCCTGCAGTC
TGAAAAACACTGACATAGTAAAGCTCAACAAATGTTTGGCTCCTTCACAATCAGTGAAGAATTAGGTACTTTCTTGCCAAAGATAGCTGAAGCTCAAAGC
CCGTACCATATGGACACTTGGGATATTTTGAGCAACCATGTTGGGATGCGGGCTAGTGGCAGCACCAACTGATAACGTGGCTATGGGAGCTATTTTAAGT
GTTCACCTACTCTCCCCATCCCATGCTCTCCCCAAATGCCAATGGTTCTCAACATTTTTTGGATCATGGCCCCTTCAAGAAATGGATGGCTACCAAGGAT
CCTCTTGTCAGAACAGCACATGTCCCCATATCTGCCACATTCTGCACTTTATTTCAGAGGCTCTATGGACTTCAGAATTTGAACCCTATTCCAGATATTC
AGACTCAGAGACCTAGAGGTATGTCTCTGCTGCCTGCCTCTTTCCTCTGAAACCATGCCTTAAAAACACCAAGGGGACATTGAAACCTGCTTTTCTGGAT
CACATTCTGAAAACTGCTGTTCAGAAGAGTTGCAGCTTCAACAGGGCCACAGGGATATAAAAGCAGCCCTGGAATGATGTCTTCCCTAAAAACAACAAAA
TCATCAATAATGAATAGGAAGAACCAATATTGTGAAAATGGCCATACTGCCCAAAGCAATTTATAGATTCAGTGCTATTCCCATTAAACTACCACTGACA
TTCTTCACAGAATTAGAAAAAACTATTTTAAAATTCATATAGAACCAAACAAGAGCTTGTAGAGCCAAGACAATCCTAAGCAAAAATAACAAAGCTAGAG
GCATCATGCTACCCAACTTCAAACTATACTACAAGGCTACAGTAACCAAAACAGCATGGTATGCTACAAAAACAGGCACATAGACCAATGAAACAGAAAG
AGAACTTAGAAATAAAACCACACATCTACAACCATCTGATCTTCCGAAAACCTGACAAAAACAAGCAATGGGGAAGGGATTCCCTATTTAATAAATGGTG
CCAGGAGAACTGGCTAGCCATATGCACAAAATTGAAACTGGCCCCTTCCTTACACCTTACACAAAAATTAACACTAGATGAATTAAAGACTTAAACGTAA
AACCAAAAACTATAAAAACCCTAGAAGAAAATCTAGGCAATAACATTCAGGACATAGGCATAGGAAAAGATTTTATGAAATTGCCAAAAGCAATTGCAAC
AAAAGCAAAAATTGACAAATGGGATCGAATTAAACTAATGAGCTTCTGCACAGCAAAAGAAACTATCATCAGAGTGAACAGACAACCTATAGAATGGGAG
AAAATGTTTTCAATCTATCCATCTGACAAAGGTCTAATATCCAGAATCTACAAGGAACTTAAGCAAATTTACGAAACCCCCCACAAACAACCCCATTAAA
AAGTGGGCAAAGAATGTGAATAGACACTTCTCAAAAGAAGACATACATGCAGCCAACAAATACATGAAAAAAGAGCTCAACATTACTGATCATTAGAGAA
ATGCAAATTAAAACCACAATGAGATACCATCTCATGCCAGTCAGAATGGCGATTATCAAAAAGTCAAGAAACAACAGATGCTGGCGAGGTTGCGAAGAAA
TAGCAACGTTTTTACGCTGTTGGTGGGAATGTAAATTAGTTCAACCATTGTGGAAGACAGTATAGCGATTCCTCAAAGATTTAGAACCAGAAATACCATT
TGATCCACAATCCCATTACTGGGAATATACCCAAAGGAATATAAATAATTCTATTATAAAGATACATGCATGCATATGTTCAATGCCGCACTATTCACAA
TAGCAGACTTGGAATCAACCCAAATGCCCATCAATGATAGACTGGATAAAGAAAATGTGGTATATATACACCATGGAATACCATGCAGCCATAAAAAGGA
ACAGGATCATATCCTTTGCAGGGACAGGGATGGAGCTGGAGGCATTATCCTCAGCAAACTGGCAAAGGAACAGAAAACCAAACACCGCATGTTCTCACTT
ATAAATGGGAGCTGAACAGTGAGAACACATGGACACAGGGAGGGGAACAACACATATTGGGGCCAGTTGGGGGAGTGCGGGGTGGAGAGAGCATCAGGAA
AAATAGCTAATGCATGCCGGGCTTAATACCTAGGTGAAGGAAGGGTTGATAGGTGCAGCAAACCAGCATGGCACATGTTTACCTATGTAACAAACCTGCA
TATCCTGCACATGTATCCCGGAACTTAAAATTTTTAAAAATCGTCAATAATAACAATGAAAGC

Expression



Full and truncated open reading frames discovered in TCONS_00252652

In silico ORF/peptide predictions
Nothing found.


RiboTaper predictions from Ribo-Seq data (HEK293 cell line)
Nothing found.

BLAST search results

No hits found.