Potential function | Interacting transcript | Gene description | Transcript biotype | lncRNA id | Alignment score (LAST) | Alignment length | Transcript region involved in interaction | Genomic orientation of interacting RNAs |
---|---|---|---|---|---|---|---|---|
ENST00000383791 | SH3-domain binding protein 5 (BTK-associated) | protein coding | ENST00000413977 | 1132 | 373 | CDS | Cis | |
TCONS_00178350 | SH3-domain binding protein 5 (BTK-associated) | novel protein coding | ENST00000413977 | 1132 | 373 | CDS | Cis |
>TCONS_00178350 (563 nt)
CATCCTCATGTGCACAGGAAGAGGTTCTAGTCCTCTGTAACATATCCCAAACAAAGCCAGCTGGACTCAGGCTTCTTTCTTAGGGCAATAGAAGCAAGAG
CTGCTAGAAGAAACAGGCCAGCATGGAACATCTGTTGGGACCTTTGTTATCTCCAGGACTTCTCAGCCTTGAATGTTCAAATGTATACTTTGACTCTCAA
AGAGGAGTGAAGGTGTAACATTTTCCCAATTTATTTGACCACAGAATCCTGACTTTGAGGAACACTTAGTACCTTCTTAATGAACACAGTGTTCCATAAA
ACATGGGAACCCACCAGAAATAGCCCTCAGGCCTGCCCAACTCTGAGACCTTTCACTGATGGCCAGAGAAAGTGAGGACCTTGGGAAACAAATCACACAG
TCTGATATCTCCCCACATACCCAGTGGAGCCCCTGACTTACCAGAAATGGCATCAGGCTCAGGTTTGCTCCCTGGCAGATCCTCCACAGATGTGCTGCTG
CCCTCAGCACCAACACCGCATCCCCGAGGCCCCATGGCACTGGAGCGCCGCCGCTCGTGGATCT
In silico ORF/peptide predictions
Nothing found.
RiboTaper predictions from Ribo-Seq data (HEK293 cell line)
Nothing found.