Detailed information on ENST00000413977

lncRNA-RNA interactions

Number of interactions: 2

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
ENST00000383791 SH3-domain binding protein 5 (BTK-associated) protein coding ENST00000413977 1132 373 CDS Cis
TCONS_00178350 SH3-domain binding protein 5 (BTK-associated) novel protein coding ENST00000413977 1132 373 CDS Cis

Sequence

>TCONS_00178350 (563 nt)
CATCCTCATGTGCACAGGAAGAGGTTCTAGTCCTCTGTAACATATCCCAAACAAAGCCAGCTGGACTCAGGCTTCTTTCTTAGGGCAATAGAAGCAAGAG
CTGCTAGAAGAAACAGGCCAGCATGGAACATCTGTTGGGACCTTTGTTATCTCCAGGACTTCTCAGCCTTGAATGTTCAAATGTATACTTTGACTCTCAA
AGAGGAGTGAAGGTGTAACATTTTCCCAATTTATTTGACCACAGAATCCTGACTTTGAGGAACACTTAGTACCTTCTTAATGAACACAGTGTTCCATAAA
ACATGGGAACCCACCAGAAATAGCCCTCAGGCCTGCCCAACTCTGAGACCTTTCACTGATGGCCAGAGAAAGTGAGGACCTTGGGAAACAAATCACACAG
TCTGATATCTCCCCACATACCCAGTGGAGCCCCTGACTTACCAGAAATGGCATCAGGCTCAGGTTTGCTCCCTGGCAGATCCTCCACAGATGTGCTGCTG
CCCTCAGCACCAACACCGCATCCCCGAGGCCCCATGGCACTGGAGCGCCGCCGCTCGTGGATCT

Expression



Full and truncated open reading frames discovered in TCONS_00178350

In silico ORF/peptide predictions
Nothing found.


RiboTaper predictions from Ribo-Seq data (HEK293 cell line)
Nothing found.

BLAST search results

No hits found.