Detailed information on ENST00000414209

lncRNA-RNA interactions

Number of interactions: 20

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
ENST00000323699 delta(4)-desaturase, sphingolipid 1 protein coding ENST00000414209 500 218 UTR3 Trans
ENST00000345714 serum/glucocorticoid regulated kinase family, member 3 protein coding ENST00000414209 637 257 UTR3 Trans
ENST00000391877 delta(4)-desaturase, sphingolipid 1 protein coding ENST00000414209 500 218 UTR3 Trans
ENST00000407780 inducible T-cell co-stimulator ligand protein coding ENST00000414209 622 259 UTR3 Trans
ENST00000513143 podoplanin protein coding ENST00000414209 512 266 UTR5 Trans
ENST00000560870 sense_intronic sense intronic ENST00000414209 530 256 noncoding Trans
ENST00000593250 centrosomal protein 76kDa nonsense mediated decay ENST00000414209 635 257 UTR3 Trans
ENST00000620139 melanoregulin protein coding ENST00000414209 544 258 UTR3 Trans
TCONS_00050192 FYVE, RhoGEF and PH domain containing 4 novel protein coding ENST00000414209 605 256 UTR5 Trans
TCONS_00050209 FYVE, RhoGEF and PH domain containing 4 novel protein coding ENST00000414209 605 256 UTR5 Trans
TCONS_00065859 ubiquitin specific peptidase 12 novel protein coding ENST00000414209 636 257 UTR3 Trans
TCONS_00065859 ubiquitin specific peptidase 12 novel protein coding ENST00000414209 615 252 UTR3 Trans
TCONS_00065864 long intergenic non-protein coding RNA 412 novel protein coding ENST00000414209 641 257 UTR3 Trans
TCONS_00148450 coiled-coil domain containing 88A novel protein coding ENST00000414209 617 258 UTR3 Trans
TCONS_00148450 coiled-coil domain containing 88A novel protein coding ENST00000414209 638 256 UTR3 Trans
TCONS_00163891 inducible T-cell co-stimulator ligand novel protein coding ENST00000414209 622 259 UTR3 Trans
TCONS_00194686 E74-like factor 2 (ets domain transcription factor) novel protein coding ENST00000414209 610 259 UTR3 Trans
TCONS_00195633 aspartylglucosaminidase novel protein coding ENST00000414209 511 257 UTR3 Trans
TCONS_00203985 family with sequence similarity 169, member A novel protein coding ENST00000414209 623 256 UTR5 Trans
TCONS_00203988 family with sequence similarity 169, member A novel noncoding ENST00000414209 623 256 noncoding Trans

Sequence

>TCONS_00203988 (2193 nt)
GGAAGACTTAAGATGGCGGCGTTTGCACGGAGTGCAATCACTGCGTCCTTACGGGGGTTGCAAGGCGTCCGAAGTATGAGTCCACTAACAAAAGTCCAGA
AACTCGCCAGTTAATAGTATTGTGTCTCTTCAAAATATCGGAGAATAATTTCTTTCTCGCTGATCGCCTAACTTCTACTGACGAAGCTTGGAAGTTGCAG
AAGGTTGGAGTGCAATGGCGCGATCTCGGCTGACTGCAACCTCCACCTCCTGGATTCAAGCTATTCTCCTGCCTCAGCCTGCCGAGTAGCTGGGATTACA
GGCATGTGCCACCGCACCCAGCTAATTTTGTATTTTTTAGTAGAGATGGGGTTTCTCCATGTTGGTCAGGCTGGTCTTGAACTCCTGACCTCAGGTGATC
CGCCCACCTCAGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCACCGCGCCCGGCCAGAACATTAGTTTTAAACTTCCTAACCCTTGGGAGAAGGCAA
AACACTTGATGAAATCTACATAAAGACTAAAACATTTTACCAATTTTGCATTGTTTGTTTGAAATTGCATTGACGACTGGTACTGGCTCCTGTATCACCC
AGCTCTGGAGTTGAAAGAGCTCTTCATTCCTGAGTCTCCTGTACCACTGAGAATAGGCTGGAGTGCAGTGGCGCAATCTCGGCTCTCTGCAACCTTCACC
TCCCGTGTTCAAGTGATTCTCCTGCCTCAGCCTCCTGAATACCTGAGATTACAAGCATGCACCACCACGCCCGTCTAATTTTGTATTTTCACTAGAGACG
GGGTTTCTCCATGTTGGTCAGGCTGGTCTCGAACTCCCGACCTCAGGTGATCCGCCCGCCTCAGCCTCCCAAAGTGCTGGGATTACAGGCATGAGCCACC
GCGTCCAGCAAGAATAGGTGATTTTCAAACTTGGAAACATTCAGAAGTTATCGCCTCAGTTTCAGATTGAGTAGTCTCAAAGAGATTACAGACATCTACC
ACAAATTCTCTACTTGGTGTGGTGCAAAATCAGTATGATGTAAACTTTGTCTCTCAGTTTCTTCAAAGGAAAGAAGCAACTGGAACACACATATAACACT
AACCCTTCCAGCTGCATTATGAGGGACCAGTACCTGTCTCAAGGCAAAATTATGACTTAGTTCATCCTCACCTCTGGAGGCCAGTAAAAGTGGGTTATAG
AAGAACAAAGAGGCATCTAGATCTTTCACTGGGTTATTTGGAGAGAAACATCTCCTACCGAAGGCCAGTTTAACAAGACTGGTAGAGGAGGTTATCTTAT
CTAATTCACAGAAATCAACACATTGAGTCAAGAAAAATGAAACACAGAAACACTCTAAATAAAAGAAGATAAGTCTTCAGAAACCAACCCTAATGAAATG
AAGATATGTGATTAACCTGACAGGAAATTAAAAAGAGCAACCATAAAGAGTCTCATGGGAGCAATGCATGAACAAACTGAGAATTTTCATAAAGAAATAA
AAGATAACAAAAAGTATAAAGTTGAAGAATACAATAACTGGACTCAAAAATTTAATGTGTCCAACAGAAGAATCGATGAAGCAGAAGAAAGGGCTATCAA
ACTTGTAGATAGGCCATTGGAAATCATGTAATGTGAGGAGAAAAAAGAAAAAAGATTGAAGATAGTTTAAGAGACTTTTGAGACATCCTCAAAGGGGAAT
AATTTATACATTACCAGATGGAGAAGATAGAGGGAAAAGGACAGAAAACATATTTGAAGAAATAATGTCAGAAAACCTCATAATTCTGGCAAGGAAATAG
AAATTTAGATCTAAGAATCTCGAACATCAGGTATGATGAATCCAAGGAGACTCACACCAAACCATATTGTAATTAAATAAAGGTTAAAGACAATCTTCAG
AGCAGCAAGGGAATAGTCTCTTCTTACATACAAAATGATCCACGGAAGACTGTCAGCAGACTTCACCAGAAAACTTTCACGCCAGAAGGCAGTCGTGATA
TATACAAAAAGCTGAAAGGAAAACACTGCCATCCAGGAATACTATCTCCAACTATCCTGTGTTTCAAAAATTAAGGAGAAATATAAAGTTCTCAAACAAA
AGATGTGGGAGTTTACCACCACTAGACCTGCACGGGAAGAATTGCTAAAGGGAGTCCTTCAAGCTGTAGTAAAAGAGTGCTAATTAGAAACATG

Expression



Full and truncated open reading frames discovered in TCONS_00203988

In silico ORF/peptide predictions
Nothing found.


RiboTaper predictions from Ribo-Seq data (HEK293 cell line)
Nothing found.

BLAST search results

No hits found.