Potential function | Interacting transcript | Gene description | Transcript biotype | lncRNA id | Alignment score (LAST) | Alignment length | Transcript region involved in interaction | Genomic orientation of interacting RNAs |
---|---|---|---|---|---|---|---|---|
ENST00000323699 | delta(4)-desaturase, sphingolipid 1 | protein coding | ENST00000414209 | 500 | 218 | UTR3 | Trans | |
ENST00000345714 | serum/glucocorticoid regulated kinase family, member 3 | protein coding | ENST00000414209 | 637 | 257 | UTR3 | Trans | |
ENST00000391877 | delta(4)-desaturase, sphingolipid 1 | protein coding | ENST00000414209 | 500 | 218 | UTR3 | Trans | |
ENST00000407780 | inducible T-cell co-stimulator ligand | protein coding | ENST00000414209 | 622 | 259 | UTR3 | Trans | |
ENST00000513143 | podoplanin | protein coding | ENST00000414209 | 512 | 266 | UTR5 | Trans | |
ENST00000560870 | sense_intronic | sense intronic | ENST00000414209 | 530 | 256 | noncoding | Trans | |
ENST00000593250 | centrosomal protein 76kDa | nonsense mediated decay | ENST00000414209 | 635 | 257 | UTR3 | Trans | |
ENST00000620139 | melanoregulin | protein coding | ENST00000414209 | 544 | 258 | UTR3 | Trans | |
TCONS_00050192 | FYVE, RhoGEF and PH domain containing 4 | novel protein coding | ENST00000414209 | 605 | 256 | UTR5 | Trans | |
TCONS_00050209 | FYVE, RhoGEF and PH domain containing 4 | novel protein coding | ENST00000414209 | 605 | 256 | UTR5 | Trans | |
TCONS_00065859 | ubiquitin specific peptidase 12 | novel protein coding | ENST00000414209 | 636 | 257 | UTR3 | Trans | |
TCONS_00065859 | ubiquitin specific peptidase 12 | novel protein coding | ENST00000414209 | 615 | 252 | UTR3 | Trans | |
TCONS_00065864 | long intergenic non-protein coding RNA 412 | novel protein coding | ENST00000414209 | 641 | 257 | UTR3 | Trans | |
TCONS_00148450 | coiled-coil domain containing 88A | novel protein coding | ENST00000414209 | 617 | 258 | UTR3 | Trans | |
TCONS_00148450 | coiled-coil domain containing 88A | novel protein coding | ENST00000414209 | 638 | 256 | UTR3 | Trans | |
TCONS_00163891 | inducible T-cell co-stimulator ligand | novel protein coding | ENST00000414209 | 622 | 259 | UTR3 | Trans | |
TCONS_00194686 | E74-like factor 2 (ets domain transcription factor) | novel protein coding | ENST00000414209 | 610 | 259 | UTR3 | Trans | |
TCONS_00195633 | aspartylglucosaminidase | novel protein coding | ENST00000414209 | 511 | 257 | UTR3 | Trans | |
TCONS_00203985 | family with sequence similarity 169, member A | novel protein coding | ENST00000414209 | 623 | 256 | UTR5 | Trans | |
TCONS_00203988 | family with sequence similarity 169, member A | novel noncoding | ENST00000414209 | 623 | 256 | noncoding | Trans |
>TCONS_00203988 (2193 nt)
GGAAGACTTAAGATGGCGGCGTTTGCACGGAGTGCAATCACTGCGTCCTTACGGGGGTTGCAAGGCGTCCGAAGTATGAGTCCACTAACAAAAGTCCAGA
AACTCGCCAGTTAATAGTATTGTGTCTCTTCAAAATATCGGAGAATAATTTCTTTCTCGCTGATCGCCTAACTTCTACTGACGAAGCTTGGAAGTTGCAG
AAGGTTGGAGTGCAATGGCGCGATCTCGGCTGACTGCAACCTCCACCTCCTGGATTCAAGCTATTCTCCTGCCTCAGCCTGCCGAGTAGCTGGGATTACA
GGCATGTGCCACCGCACCCAGCTAATTTTGTATTTTTTAGTAGAGATGGGGTTTCTCCATGTTGGTCAGGCTGGTCTTGAACTCCTGACCTCAGGTGATC
CGCCCACCTCAGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCACCGCGCCCGGCCAGAACATTAGTTTTAAACTTCCTAACCCTTGGGAGAAGGCAA
AACACTTGATGAAATCTACATAAAGACTAAAACATTTTACCAATTTTGCATTGTTTGTTTGAAATTGCATTGACGACTGGTACTGGCTCCTGTATCACCC
AGCTCTGGAGTTGAAAGAGCTCTTCATTCCTGAGTCTCCTGTACCACTGAGAATAGGCTGGAGTGCAGTGGCGCAATCTCGGCTCTCTGCAACCTTCACC
TCCCGTGTTCAAGTGATTCTCCTGCCTCAGCCTCCTGAATACCTGAGATTACAAGCATGCACCACCACGCCCGTCTAATTTTGTATTTTCACTAGAGACG
GGGTTTCTCCATGTTGGTCAGGCTGGTCTCGAACTCCCGACCTCAGGTGATCCGCCCGCCTCAGCCTCCCAAAGTGCTGGGATTACAGGCATGAGCCACC
GCGTCCAGCAAGAATAGGTGATTTTCAAACTTGGAAACATTCAGAAGTTATCGCCTCAGTTTCAGATTGAGTAGTCTCAAAGAGATTACAGACATCTACC
ACAAATTCTCTACTTGGTGTGGTGCAAAATCAGTATGATGTAAACTTTGTCTCTCAGTTTCTTCAAAGGAAAGAAGCAACTGGAACACACATATAACACT
AACCCTTCCAGCTGCATTATGAGGGACCAGTACCTGTCTCAAGGCAAAATTATGACTTAGTTCATCCTCACCTCTGGAGGCCAGTAAAAGTGGGTTATAG
AAGAACAAAGAGGCATCTAGATCTTTCACTGGGTTATTTGGAGAGAAACATCTCCTACCGAAGGCCAGTTTAACAAGACTGGTAGAGGAGGTTATCTTAT
CTAATTCACAGAAATCAACACATTGAGTCAAGAAAAATGAAACACAGAAACACTCTAAATAAAAGAAGATAAGTCTTCAGAAACCAACCCTAATGAAATG
AAGATATGTGATTAACCTGACAGGAAATTAAAAAGAGCAACCATAAAGAGTCTCATGGGAGCAATGCATGAACAAACTGAGAATTTTCATAAAGAAATAA
AAGATAACAAAAAGTATAAAGTTGAAGAATACAATAACTGGACTCAAAAATTTAATGTGTCCAACAGAAGAATCGATGAAGCAGAAGAAAGGGCTATCAA
ACTTGTAGATAGGCCATTGGAAATCATGTAATGTGAGGAGAAAAAAGAAAAAAGATTGAAGATAGTTTAAGAGACTTTTGAGACATCCTCAAAGGGGAAT
AATTTATACATTACCAGATGGAGAAGATAGAGGGAAAAGGACAGAAAACATATTTGAAGAAATAATGTCAGAAAACCTCATAATTCTGGCAAGGAAATAG
AAATTTAGATCTAAGAATCTCGAACATCAGGTATGATGAATCCAAGGAGACTCACACCAAACCATATTGTAATTAAATAAAGGTTAAAGACAATCTTCAG
AGCAGCAAGGGAATAGTCTCTTCTTACATACAAAATGATCCACGGAAGACTGTCAGCAGACTTCACCAGAAAACTTTCACGCCAGAAGGCAGTCGTGATA
TATACAAAAAGCTGAAAGGAAAACACTGCCATCCAGGAATACTATCTCCAACTATCCTGTGTTTCAAAAATTAAGGAGAAATATAAAGTTCTCAAACAAA
AGATGTGGGAGTTTACCACCACTAGACCTGCACGGGAAGAATTGCTAAAGGGAGTCCTTCAAGCTGTAGTAAAAGAGTGCTAATTAGAAACATG
In silico ORF/peptide predictions
Nothing found.
RiboTaper predictions from Ribo-Seq data (HEK293 cell line)
Nothing found.