Detailed information on ENST00000415801

lncRNA-RNA interactions

Number of interactions: 35

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
ENST00000330676 TLC domain containing 2 protein coding ENST00000415801 623 304 UTR3 Trans
ENST00000378004 Rho GTPase activating protein 26 protein coding ENST00000415801 552 304 UTR3 Trans
ENST00000422247 centrosomal protein 135kDa protein coding ENST00000415801 607 279 UTR3 Trans
ENST00000439138 transmembrane protein 98 protein coding ENST00000415801 545 281 UTR5 Trans
ENST00000463899 N-acetylneuraminate pyruvate lyase (dihydrodipicolinate synthase) processed transcript ENST00000415801 510 297 noncoding Trans
ENST00000478730 ORAI calcium release-activated calcium modulator 2 protein coding ENST00000415801 536 295 UTR3 Trans
ENST00000513000 inositol polyphosphate-4-phosphatase, type II, 105kDa protein coding ENST00000415801 502 265 UTR3 Trans
ENST00000513143 podoplanin protein coding ENST00000415801 568 300 UTR5 Trans
ENST00000560870 sense_intronic sense intronic ENST00000415801 542 274 noncoding Trans
TCONS_00021902 protein tyrosine phosphatase, non-receptor type 14 novel protein coding ENST00000415801 603 304 UTR3 Trans
TCONS_00021903 protein tyrosine phosphatase, non-receptor type 14 novel protein coding ENST00000415801 603 304 UTR3 Trans
TCONS_00030591 cytoplasmic polyadenylation element binding protein 3 novel protein coding ENST00000415801 633 280 UTR3 Trans
TCONS_00030592 cytoplasmic polyadenylation element binding protein 3 novel protein coding ENST00000415801 633 280 UTR3 Trans
TCONS_00039782 GRAM domain containing 1B novel protein coding ENST00000415801 615 304 UTR5 Trans
TCONS_00043422 vacuolar protein sorting 37 homolog C (S. cerevisiae) novel protein coding ENST00000415801 604 280 UTR5 Trans
TCONS_00065864 long intergenic non-protein coding RNA 412 novel protein coding ENST00000415801 655 298 UTR3 Trans
TCONS_00076763 protein phosphatase 1, regulatory subunit 13B novel protein coding ENST00000415801 620 299 UTR3 Trans
TCONS_00088780 synaptotagmin XVII novel protein coding ENST00000415801 611 280 UTR3 Trans
TCONS_00142168 LY6/PLAUR domain containing 6B novel protein coding ENST00000415801 608 303 UTR5 Trans
TCONS_00147093 ATPase family, AAA domain containing 2B novel protein coding ENST00000415801 628 280 UTR3 Trans
TCONS_00148450 coiled-coil domain containing 88A novel protein coding ENST00000415801 658 302 UTR3 Trans
TCONS_00150627 UDP-glucuronate decarboxylase 1 novel protein coding ENST00000415801 622 299 UTR5 Trans
TCONS_00185516 transcribed_unprocessed_pseudogene novel protein coding ENST00000415801 625 274 UTR5 Trans
TCONS_00185519 transcribed_unprocessed_pseudogene novel protein coding ENST00000415801 625 274 UTR3 Trans
TCONS_00194686 E74-like factor 2 (ets domain transcription factor) novel protein coding ENST00000415801 638 304 UTR3 Trans
TCONS_00204911 erythrocyte membrane protein band 4.1 like 4A novel noncoding ENST00000415801 616 299 noncoding Trans
TCONS_00204916 erythrocyte membrane protein band 4.1 like 4A novel protein coding ENST00000415801 616 299 UTR3 Trans
TCONS_00235205 epithelial splicing regulatory protein 1 novel protein coding ENST00000415801 600 305 UTR3 Trans
TCONS_00235219 epithelial splicing regulatory protein 1 novel protein coding ENST00000415801 600 305 UTR3 Trans
TCONS_00235231 epithelial splicing regulatory protein 1 novel protein coding ENST00000415801 600 305 UTR3 Trans
TCONS_00240688 metastasis suppressor 1 novel protein coding ENST00000415801 608 280 UTR3 Trans
TCONS_00243477 osteoclast stimulating factor 1 novel protein coding ENST00000415801 668 299 UTR5 Trans
TCONS_00243482 osteoclast stimulating factor 1 novel protein coding ENST00000415801 668 299 UTR5 Trans
TCONS_00247058 UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 1 novel protein coding ENST00000415801 618 287 UTR3 Trans
TCONS_00252827 discs, large homolog 3 (Drosophila) novel protein coding ENST00000415801 656 303 UTR5 Trans

Sequence

>TCONS_00252827 (4386 nt)
TATCAACTCCATCTGTCACAAAAATTAAGGCTAAATCTCCTCTCCAGAAGCAGAGGGAGCCGGGGCTCCGACGCGCTCAGCGTCGGGCTGTCTGCCTCTC
CCTAGAGGCCAAGTGAATTTGAAATGGCAAAAGTCACAGCCGGAGGCCCAGCACTAGGAGATTCCTCCGGCTGCGGGAAATCTTCCTGTACCTGCTGAAG
CTGCTGCGTTCCTCAGAGGCGCTTGGTCTGCCGTGGGAAGCTGCACCTCTGCAGTCCCCAAAACCAAAATCAAACCTTAAAAGAGCCAGACTGAGAAGCC
AGTCACCACGTAAGACATCTGGACCACCTTCAGACTCGCATGCTGTGAGGAAGCCCATGCTTACTATGTGTAGAGGATACATGGAGAAGGAAAGAGATGC
CTGGCCAGCTCCCTGCTGTTTCAGCCATGCAGAGGTGCTGAGCAGCTAATTGGAGGGGATAGTATGAGCCTCCAAAGATTAGGGAAGAAAATTGCAGTTG
AAGAAAACTTGCTTTGGTTCAATGCAAAAATAATGGGATGAATGGCATGCTGAAATATCATATGACTTACGAAAATGATGAATGGTTTATTGAATCTACA
TATGTGGAACCCATGAATGGGAGTCGGAGAAGGGGGCAACTGTATACGCAAAAAGCTATCATAATTGCCAAAATAGTGATAACAATGTTGAAACACTACT
GGGATTACTACTGTTAATGACTACCAGTGATCAAGCACCTCCCCTGCCCCAGTGTTTGCCTGCCTTGTTTGAAGACACGAAAAAATGTACACAAAATGAT
TTAGAACTGTTGAACTTTTCAGAAAATAATTTAAAATCATCTACCTCATAACTAAAGGACACTGAATTGGAGCCAGCTGATGTAAGGAGCTTACCTTGGT
TGCCACCTTCTGGTCTCTGTTTGAGGAACAACTGCATGTGATTAAGGATGAAGAAACTGAGACCCCAAGAATTTAAGTAATTTGTTCAAGGCAACACACT
GCTATGTGGTAGAACTACAAATTGAGCCCAAATAATCCAGCTTCAGATACTATGCAAAGGTATCCTAGGTGTGGGGGTGATAACCTGGTGACAATCCCTT
CTCAGAAGGAAAACAGGTCCCATCTACAGAGGTGAAGCAGAGTGTGGAACTGAAAAACTCAATGGAAGAATGGCTATTAAGATTTAGGACGGCTGGGAAA
TAATAAAGTAATAATAATAATACTAGGTATTGACGTGTGCTACATGCCAGGCCTTGGGTGACATTTGGATTGATTCCCATTTTCTTTACTTTTCAGCAGT
GGGGTCTTTCACCTTTCAAGCTCTGCCTGAGAAGTCAACATGGTGGCATTTGGCTAGGTTCTTTTAGGCAACCAATTGTTTTAACATGATTTGTTGAAAA
GCCTATTCTCTCTTTCATTGAACTATAATGCTAGCTCTGTCATAAATCAAATTTTCATTTGATTTATGATATGAAAATTATATGCATTTGATTGATATGC
ATTTTTTCTCCAATGATACTCAACTGTCTTAATTATATAATTTTGTAGTAATTCTTGGTATCTAATTAGGCAAATACCCACTCCCAACCCTGTTTCTTTT
GTTTTTAAATCCAGGGGTGTTTTGGATATTCTCGTTCATTTGTGCTTCCACCTACATTTTTCAGTTAACTTGTCAGGTACGAAAAAATAAAAGGCAAAAT
TTTTTATCCTTAAATCAATTTGGGCAAGTTTGCAGTTTTTTCTTGTATTGTAACTTCCAATCTATGAATATGATCTATTTTTTCACCAATTTATGGCTTC
TTCCAATAACATTTTATAATTGTCTTTTTAGAGGCCTTATCTTTTGTTTAGATTCATATCTAGGTATTTAATATTTTTGATGCTGTTATAAATGGTATTT
TTAAAAATATATACATTTTTAACTATTTCACATAGAAAACTTTAATGGATTTTTAAAATGTAGATTTGTATTCAGTAAACCTGTTAAAATCTCTTAGAAT
GTCTAAGAGTTTATTTATTCAATTTGATTTTCTTTTTTTTTTTTTCTCCTGGAGACGGAGTTTCGCTCTTGTTGCCCAGGCTGGAGTGCAGTGGCATGAT
CTCAGCTCACTGCAACCTCCGGCTCCCGGGTTCAAGCAATTCTCCTGTCTCAGCCTCCTGAGTAGCTGGGATTACAGGCTCCCACCACCATGCCCAGCTA
ATTTTTGGTATTTTTAGTAGAGACAGAGTTTCACCATGTTGGCCAGGCTGGTCTCAAACTCCTGACCTCAGGTGATCCGACTGCTTTGGCTTCCCAAACT
GCTGGCATTACAGGCGTGAGCCACTGCGCCCTGGCCTATTCTACTGGATTTTCTATGCAATTGTGTTATAACTCATCATAAAGATAATTTTATTTCTTTT
CCACAATCTTTACAGGTTTAATTTTTTTCTATGCCTTGCTGCACTCTCTATGATTTCCAGTATTGGCACTACTCTGGCCTTTGGTCTTTGCTCTTGCATC
AGCCTTTCATAATTGGGTATGTTTGTTGTAAGTTTTCTGTAGAGAGTCTTTATGAGGTTAAGAGATTTGTTTCATTTCTAGTTTATTAAGAGATTTTATT
ATAGATCAATGTTAAATTTTATCAAAATTTCTCCATTGCATTTCTATTGAGATGATCACATGATTATTAAAAATTAGTATAAAGATTTATTATTTTGATA
TTTTAAAATCAGGTTTATTGAGGCATAATTTATATATAATAAAATTTACCCTATTAGAGTATCCAGTCCAGTAAGTTTTGGTAAATGTATGCGAATAACA
CAATAAACAGGTTTAGAACTTTTCCATCACCACAAAAAGTTTATCAGGCCCCTTTGCAGTTAATACTCACCTTCTCTCCAGCCCCAGTAAACCATGGATC
TGCTTTTTGTTACTGTAGTTTTTCCTTTACTTTGATTTTTTTGAGTGTTAAGCCAGCCTTACATTTCTGAGTTAACTTGGTCATGATATCTTCTACAAAC
ATTAATGAATTTAGTATGATTGGCTGATGCCTTTGCTTTCCTATACTGTCCTTGCCTGGTTGGTACAAGGATTATATAATACTTATAAAGTGAGTTGAAG
ACAGTTTCCTCTTTTCACCAGCTGGAATAATTTATGTATTATTGAAATTAATTGCTCCTTAAATACTTGGCAGAATTCACTACAAAGGCACTTAATTCTA
GACCTTTTGGAGGAAGATAAAATACTGATTTTTTAAATCATTATTTTATTTTTGTAATACAGCTTATTTTTCCAGAAACTTCTACTTTTCGTTTACATCT
TCAAGTCAGATTAAAGTTGTATTAATAACCCCTTATTATTTAAATCTCAGCAGAATGTGAAGTTATGTTCCCCCTTTGTATCCATTTTTTTCTCTAGATA
TTTTTCTGTTACCTGTTTTAAATTTAATTCCATTGTGGTCAGAGATAATACTTTGTATGACTTGCATTCTTTTATGTATATTGAGACTTGTTATAAGGCA
CAGAGTATGGTTTATCTTGGTAATCATTCGTGGCACACTTAAAAATCATGTGTTTTCTGCTATTGTTGAGTGGGATGTTCTGTAACTGTGAATTAGGTCA
AGTTAGTTGACAGTGTTGTTCAAGTCTTTTATATTATTACTGACTTTCTTTCTACTCACTCTATCAATTAGTGAAAGGTGTCAATATTTCCAGTTATAAT
CATGGATTTGTCTATTATTACTTTCAGTTAGAAATTTCTAGCTGAAATTATCTATTTCTACTTTCAGTTAGTGTTAGCTTGCTATATCTTTTTTCCATCC
TTCTTCTTTTAACCCAATGTATCTTTATATTGACATTACATATATGATTTATATTATATTATGTTACTATATCTTGTATGCAGCATATATTTGGATCTTT
TTTATCCAATCTGATGATCTTTGCTTTTTAATTAATGTATTTAGATCATTTACATTTACTGTGATTATTAATATGTATTAAGTTCAAATCTACCACTTTG
GTATTGAATATCTAATTGTCCCATTTGTTCTTTGTTTCAAAAAAACTCTTTTTTTGCCTTTTTTTATATCAAGTATTTTAAAATTCTATTTCATCTTCTT
TGTTTGCTTATTAGCTATAACTTTATTTTGCTAATTTAGTGGTTGCTTTAGGGTTTATAGTAAACATCTTCAACTTATCACATTCTATGTTCTAGTCATA
TTATATTATTTAACACATAGTATAAAAACTTTATTGTAGTATACTTTCATTTTCCTCCAGTAATTGTGCGATTCTTGTCATCTATTTTGCTTCTACATGT
TATAAACTCTACATGATTTTGTAATATTTTTGTTTAAACAATATTTATTTAGACTTAATAATAAATAATAAAAATATATGCTAACCA

Expression



Full and truncated open reading frames discovered in TCONS_00252827

In silico ORF/peptide predictions
Nothing found.


RiboTaper predictions from Ribo-Seq data (HEK293 cell line)
Nothing found.

BLAST search results

No hits found.