Potential function | Interacting transcript | Gene description | Transcript biotype | lncRNA id | Alignment score (LAST) | Alignment length | Transcript region involved in interaction | Genomic orientation of interacting RNAs |
---|---|---|---|---|---|---|---|---|
ENST00000330676 | TLC domain containing 2 | protein coding | ENST00000415801 | 623 | 304 | UTR3 | Trans | |
ENST00000378004 | Rho GTPase activating protein 26 | protein coding | ENST00000415801 | 552 | 304 | UTR3 | Trans | |
ENST00000422247 | centrosomal protein 135kDa | protein coding | ENST00000415801 | 607 | 279 | UTR3 | Trans | |
ENST00000439138 | transmembrane protein 98 | protein coding | ENST00000415801 | 545 | 281 | UTR5 | Trans | |
ENST00000463899 | N-acetylneuraminate pyruvate lyase (dihydrodipicolinate synthase) | processed transcript | ENST00000415801 | 510 | 297 | noncoding | Trans | |
ENST00000478730 | ORAI calcium release-activated calcium modulator 2 | protein coding | ENST00000415801 | 536 | 295 | UTR3 | Trans | |
ENST00000513000 | inositol polyphosphate-4-phosphatase, type II, 105kDa | protein coding | ENST00000415801 | 502 | 265 | UTR3 | Trans | |
ENST00000513143 | podoplanin | protein coding | ENST00000415801 | 568 | 300 | UTR5 | Trans | |
ENST00000560870 | sense_intronic | sense intronic | ENST00000415801 | 542 | 274 | noncoding | Trans | |
TCONS_00021902 | protein tyrosine phosphatase, non-receptor type 14 | novel protein coding | ENST00000415801 | 603 | 304 | UTR3 | Trans | |
TCONS_00021903 | protein tyrosine phosphatase, non-receptor type 14 | novel protein coding | ENST00000415801 | 603 | 304 | UTR3 | Trans | |
TCONS_00030591 | cytoplasmic polyadenylation element binding protein 3 | novel protein coding | ENST00000415801 | 633 | 280 | UTR3 | Trans | |
TCONS_00030592 | cytoplasmic polyadenylation element binding protein 3 | novel protein coding | ENST00000415801 | 633 | 280 | UTR3 | Trans | |
TCONS_00039782 | GRAM domain containing 1B | novel protein coding | ENST00000415801 | 615 | 304 | UTR5 | Trans | |
TCONS_00043422 | vacuolar protein sorting 37 homolog C (S. cerevisiae) | novel protein coding | ENST00000415801 | 604 | 280 | UTR5 | Trans | |
TCONS_00065864 | long intergenic non-protein coding RNA 412 | novel protein coding | ENST00000415801 | 655 | 298 | UTR3 | Trans | |
TCONS_00076763 | protein phosphatase 1, regulatory subunit 13B | novel protein coding | ENST00000415801 | 620 | 299 | UTR3 | Trans | |
TCONS_00088780 | synaptotagmin XVII | novel protein coding | ENST00000415801 | 611 | 280 | UTR3 | Trans | |
TCONS_00142168 | LY6/PLAUR domain containing 6B | novel protein coding | ENST00000415801 | 608 | 303 | UTR5 | Trans | |
TCONS_00147093 | ATPase family, AAA domain containing 2B | novel protein coding | ENST00000415801 | 628 | 280 | UTR3 | Trans | |
TCONS_00148450 | coiled-coil domain containing 88A | novel protein coding | ENST00000415801 | 658 | 302 | UTR3 | Trans | |
TCONS_00150627 | UDP-glucuronate decarboxylase 1 | novel protein coding | ENST00000415801 | 622 | 299 | UTR5 | Trans | |
TCONS_00185516 | transcribed_unprocessed_pseudogene | novel protein coding | ENST00000415801 | 625 | 274 | UTR5 | Trans | |
TCONS_00185519 | transcribed_unprocessed_pseudogene | novel protein coding | ENST00000415801 | 625 | 274 | UTR3 | Trans | |
TCONS_00194686 | E74-like factor 2 (ets domain transcription factor) | novel protein coding | ENST00000415801 | 638 | 304 | UTR3 | Trans | |
TCONS_00204911 | erythrocyte membrane protein band 4.1 like 4A | novel noncoding | ENST00000415801 | 616 | 299 | noncoding | Trans | |
TCONS_00204916 | erythrocyte membrane protein band 4.1 like 4A | novel protein coding | ENST00000415801 | 616 | 299 | UTR3 | Trans | |
TCONS_00235205 | epithelial splicing regulatory protein 1 | novel protein coding | ENST00000415801 | 600 | 305 | UTR3 | Trans | |
TCONS_00235219 | epithelial splicing regulatory protein 1 | novel protein coding | ENST00000415801 | 600 | 305 | UTR3 | Trans | |
TCONS_00235231 | epithelial splicing regulatory protein 1 | novel protein coding | ENST00000415801 | 600 | 305 | UTR3 | Trans | |
TCONS_00240688 | metastasis suppressor 1 | novel protein coding | ENST00000415801 | 608 | 280 | UTR3 | Trans | |
TCONS_00243477 | osteoclast stimulating factor 1 | novel protein coding | ENST00000415801 | 668 | 299 | UTR5 | Trans | |
TCONS_00243482 | osteoclast stimulating factor 1 | novel protein coding | ENST00000415801 | 668 | 299 | UTR5 | Trans | |
TCONS_00247058 | UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 1 | novel protein coding | ENST00000415801 | 618 | 287 | UTR3 | Trans | |
TCONS_00252827 | discs, large homolog 3 (Drosophila) | novel protein coding | ENST00000415801 | 656 | 303 | UTR5 | Trans |
>TCONS_00252827 (4386 nt)
TATCAACTCCATCTGTCACAAAAATTAAGGCTAAATCTCCTCTCCAGAAGCAGAGGGAGCCGGGGCTCCGACGCGCTCAGCGTCGGGCTGTCTGCCTCTC
CCTAGAGGCCAAGTGAATTTGAAATGGCAAAAGTCACAGCCGGAGGCCCAGCACTAGGAGATTCCTCCGGCTGCGGGAAATCTTCCTGTACCTGCTGAAG
CTGCTGCGTTCCTCAGAGGCGCTTGGTCTGCCGTGGGAAGCTGCACCTCTGCAGTCCCCAAAACCAAAATCAAACCTTAAAAGAGCCAGACTGAGAAGCC
AGTCACCACGTAAGACATCTGGACCACCTTCAGACTCGCATGCTGTGAGGAAGCCCATGCTTACTATGTGTAGAGGATACATGGAGAAGGAAAGAGATGC
CTGGCCAGCTCCCTGCTGTTTCAGCCATGCAGAGGTGCTGAGCAGCTAATTGGAGGGGATAGTATGAGCCTCCAAAGATTAGGGAAGAAAATTGCAGTTG
AAGAAAACTTGCTTTGGTTCAATGCAAAAATAATGGGATGAATGGCATGCTGAAATATCATATGACTTACGAAAATGATGAATGGTTTATTGAATCTACA
TATGTGGAACCCATGAATGGGAGTCGGAGAAGGGGGCAACTGTATACGCAAAAAGCTATCATAATTGCCAAAATAGTGATAACAATGTTGAAACACTACT
GGGATTACTACTGTTAATGACTACCAGTGATCAAGCACCTCCCCTGCCCCAGTGTTTGCCTGCCTTGTTTGAAGACACGAAAAAATGTACACAAAATGAT
TTAGAACTGTTGAACTTTTCAGAAAATAATTTAAAATCATCTACCTCATAACTAAAGGACACTGAATTGGAGCCAGCTGATGTAAGGAGCTTACCTTGGT
TGCCACCTTCTGGTCTCTGTTTGAGGAACAACTGCATGTGATTAAGGATGAAGAAACTGAGACCCCAAGAATTTAAGTAATTTGTTCAAGGCAACACACT
GCTATGTGGTAGAACTACAAATTGAGCCCAAATAATCCAGCTTCAGATACTATGCAAAGGTATCCTAGGTGTGGGGGTGATAACCTGGTGACAATCCCTT
CTCAGAAGGAAAACAGGTCCCATCTACAGAGGTGAAGCAGAGTGTGGAACTGAAAAACTCAATGGAAGAATGGCTATTAAGATTTAGGACGGCTGGGAAA
TAATAAAGTAATAATAATAATACTAGGTATTGACGTGTGCTACATGCCAGGCCTTGGGTGACATTTGGATTGATTCCCATTTTCTTTACTTTTCAGCAGT
GGGGTCTTTCACCTTTCAAGCTCTGCCTGAGAAGTCAACATGGTGGCATTTGGCTAGGTTCTTTTAGGCAACCAATTGTTTTAACATGATTTGTTGAAAA
GCCTATTCTCTCTTTCATTGAACTATAATGCTAGCTCTGTCATAAATCAAATTTTCATTTGATTTATGATATGAAAATTATATGCATTTGATTGATATGC
ATTTTTTCTCCAATGATACTCAACTGTCTTAATTATATAATTTTGTAGTAATTCTTGGTATCTAATTAGGCAAATACCCACTCCCAACCCTGTTTCTTTT
GTTTTTAAATCCAGGGGTGTTTTGGATATTCTCGTTCATTTGTGCTTCCACCTACATTTTTCAGTTAACTTGTCAGGTACGAAAAAATAAAAGGCAAAAT
TTTTTATCCTTAAATCAATTTGGGCAAGTTTGCAGTTTTTTCTTGTATTGTAACTTCCAATCTATGAATATGATCTATTTTTTCACCAATTTATGGCTTC
TTCCAATAACATTTTATAATTGTCTTTTTAGAGGCCTTATCTTTTGTTTAGATTCATATCTAGGTATTTAATATTTTTGATGCTGTTATAAATGGTATTT
TTAAAAATATATACATTTTTAACTATTTCACATAGAAAACTTTAATGGATTTTTAAAATGTAGATTTGTATTCAGTAAACCTGTTAAAATCTCTTAGAAT
GTCTAAGAGTTTATTTATTCAATTTGATTTTCTTTTTTTTTTTTTCTCCTGGAGACGGAGTTTCGCTCTTGTTGCCCAGGCTGGAGTGCAGTGGCATGAT
CTCAGCTCACTGCAACCTCCGGCTCCCGGGTTCAAGCAATTCTCCTGTCTCAGCCTCCTGAGTAGCTGGGATTACAGGCTCCCACCACCATGCCCAGCTA
ATTTTTGGTATTTTTAGTAGAGACAGAGTTTCACCATGTTGGCCAGGCTGGTCTCAAACTCCTGACCTCAGGTGATCCGACTGCTTTGGCTTCCCAAACT
GCTGGCATTACAGGCGTGAGCCACTGCGCCCTGGCCTATTCTACTGGATTTTCTATGCAATTGTGTTATAACTCATCATAAAGATAATTTTATTTCTTTT
CCACAATCTTTACAGGTTTAATTTTTTTCTATGCCTTGCTGCACTCTCTATGATTTCCAGTATTGGCACTACTCTGGCCTTTGGTCTTTGCTCTTGCATC
AGCCTTTCATAATTGGGTATGTTTGTTGTAAGTTTTCTGTAGAGAGTCTTTATGAGGTTAAGAGATTTGTTTCATTTCTAGTTTATTAAGAGATTTTATT
ATAGATCAATGTTAAATTTTATCAAAATTTCTCCATTGCATTTCTATTGAGATGATCACATGATTATTAAAAATTAGTATAAAGATTTATTATTTTGATA
TTTTAAAATCAGGTTTATTGAGGCATAATTTATATATAATAAAATTTACCCTATTAGAGTATCCAGTCCAGTAAGTTTTGGTAAATGTATGCGAATAACA
CAATAAACAGGTTTAGAACTTTTCCATCACCACAAAAAGTTTATCAGGCCCCTTTGCAGTTAATACTCACCTTCTCTCCAGCCCCAGTAAACCATGGATC
TGCTTTTTGTTACTGTAGTTTTTCCTTTACTTTGATTTTTTTGAGTGTTAAGCCAGCCTTACATTTCTGAGTTAACTTGGTCATGATATCTTCTACAAAC
ATTAATGAATTTAGTATGATTGGCTGATGCCTTTGCTTTCCTATACTGTCCTTGCCTGGTTGGTACAAGGATTATATAATACTTATAAAGTGAGTTGAAG
ACAGTTTCCTCTTTTCACCAGCTGGAATAATTTATGTATTATTGAAATTAATTGCTCCTTAAATACTTGGCAGAATTCACTACAAAGGCACTTAATTCTA
GACCTTTTGGAGGAAGATAAAATACTGATTTTTTAAATCATTATTTTATTTTTGTAATACAGCTTATTTTTCCAGAAACTTCTACTTTTCGTTTACATCT
TCAAGTCAGATTAAAGTTGTATTAATAACCCCTTATTATTTAAATCTCAGCAGAATGTGAAGTTATGTTCCCCCTTTGTATCCATTTTTTTCTCTAGATA
TTTTTCTGTTACCTGTTTTAAATTTAATTCCATTGTGGTCAGAGATAATACTTTGTATGACTTGCATTCTTTTATGTATATTGAGACTTGTTATAAGGCA
CAGAGTATGGTTTATCTTGGTAATCATTCGTGGCACACTTAAAAATCATGTGTTTTCTGCTATTGTTGAGTGGGATGTTCTGTAACTGTGAATTAGGTCA
AGTTAGTTGACAGTGTTGTTCAAGTCTTTTATATTATTACTGACTTTCTTTCTACTCACTCTATCAATTAGTGAAAGGTGTCAATATTTCCAGTTATAAT
CATGGATTTGTCTATTATTACTTTCAGTTAGAAATTTCTAGCTGAAATTATCTATTTCTACTTTCAGTTAGTGTTAGCTTGCTATATCTTTTTTCCATCC
TTCTTCTTTTAACCCAATGTATCTTTATATTGACATTACATATATGATTTATATTATATTATGTTACTATATCTTGTATGCAGCATATATTTGGATCTTT
TTTATCCAATCTGATGATCTTTGCTTTTTAATTAATGTATTTAGATCATTTACATTTACTGTGATTATTAATATGTATTAAGTTCAAATCTACCACTTTG
GTATTGAATATCTAATTGTCCCATTTGTTCTTTGTTTCAAAAAAACTCTTTTTTTGCCTTTTTTTATATCAAGTATTTTAAAATTCTATTTCATCTTCTT
TGTTTGCTTATTAGCTATAACTTTATTTTGCTAATTTAGTGGTTGCTTTAGGGTTTATAGTAAACATCTTCAACTTATCACATTCTATGTTCTAGTCATA
TTATATTATTTAACACATAGTATAAAAACTTTATTGTAGTATACTTTCATTTTCCTCCAGTAATTGTGCGATTCTTGTCATCTATTTTGCTTCTACATGT
TATAAACTCTACATGATTTTGTAATATTTTTGTTTAAACAATATTTATTTAGACTTAATAATAAATAATAAAAATATATGCTAACCA
In silico ORF/peptide predictions
Nothing found.
RiboTaper predictions from Ribo-Seq data (HEK293 cell line)
Nothing found.