Detailed information on ENST00000415861

lncRNA-RNA interactions

Number of interactions: 9

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
ENST00000511184 E74-like factor 2 (ets domain transcription factor) nonsense mediated decay ENST00000415861 528 302 CDS_UTR Trans
TCONS_00030165 antisense novel protein coding ENST00000415861 526 301 UTR3 Trans
TCONS_00041296 RIC3 acetylcholine receptor chaperone novel protein coding ENST00000415861 617 298 UTR3 Trans
TCONS_00041298 RIC3 acetylcholine receptor chaperone novel protein coding ENST00000415861 617 298 UTR3 Trans
TCONS_00161618 interferon gamma receptor 2 (interferon gamma transducer 1) novel protein coding ENST00000415861 504 296 UTR3 Trans
TCONS_00170642 solute carrier family 6 (neurotransmitter transporter), member 6 novel protein coding ENST00000415861 554 299 UTR3 Trans
TCONS_00189916 doublecortin-like kinase 2 novel protein coding ENST00000415861 557 301 UTR3 Trans
TCONS_00189917 doublecortin-like kinase 2 novel protein coding ENST00000415861 557 301 UTR3 Trans
TCONS_00189925 doublecortin-like kinase 2 novel protein coding ENST00000415861 557 301 UTR3 Trans

Sequence

>TCONS_00189925 (4962 nt)
GCTGGGTAATGAGAACCAAATTGCAAATTTGCAGAATTTTTTTCCTAACATTGTCAAACAATTGGTAATAGTGTTTTGAGATTGAACAGAATTTGATGTG
TTTAATTTGTAAAGTGTATTTTTTTGTGGTTACACAGAAGCAGTAAAAACCTTGACAGAAATAATGAGCTTTAACATAACCACAGCCTCTAATCTAAGAA
TTCTGTGTAAGGACCAGTCTTACCAGAGATAAGGTCAAATATTTTCCTGTAAGATTTTCTCAGCATGGAGAGTTGAGAGAACTGTTTAATCAAGAGCAGG
ATGGATGGAAGTATGTACAACAATGCTTGAAGTAAGAGGGAAAAAAGAAAGCAAATGGGTCTGAACATATCCATCAGTATTATTTGTATATCACCTATTA
GCTTCTAAGTAGTATCAATATTAATAAAAGAAGTCTTAAGCTCTCTGTGACTCATGGTCATGTGAAAATTAGAATACCTTAGTTTCCTAGGATTCAGTCA
ACCTTGGGATTATGGGTAGTCAGCCTGTTACGAGAGTCCTGGTCTTTAAAGATCTACTTTTAGCAACAATTCAGGTATTTAGCAATATCTGAAAACTGTC
AAGCCCTGCTCTTTTAGTGTATATTTACTGTTAAAGCACAGAACTTCCTCTTTTATATTAGTAGAATTTGGGAGGATGCTGATTCCTATTGAGGTTTTTG
TTCGATTGTTTGAAAGTCTAATGCAGTGAAAAGATTACTCATTTCTGTGCTTCATCAACAGTTATTTGGCACCCTTTCCCTGTCTTTCGTGGGTTAAGCA
TATCACTTTGAAGTCTGTTCAGTTATGTACTTTAAACAGAAGTAACATTTGTTTTCCAAATTCTCTTTAGCCTTCAAACCCTTTTTTCTGAAATAGTACA
AAAATGAATGTTTGCATAGCACCTTACATTTTTATAAAAATATAAATCTCATATGATTAATCTTCCTCATCTTTCCCCAGATCATCCCTAGCGGCCCACC
AGCATAAGCATATCCTCATATTGAAGCCCTTGCACTCTGAAGCCTGACTTACCTAATGATTTCCTGAGACAAAATAAGCTCTCTTAGCTAGTGACTCCTA
TAGTGCACTTTCCAAAAATTTGAACCCTACCCTTAGGACAACCTCTTAATGAAACCTTTCTCAAATGCTCCAGCAAACTTTGAATTTATTTGGTAGCCAT
TTGGATGTTAGAAAAAATGTTAATTTGTAGAAACTATATTCACATCCTTCCTTTCTGAAAGCCTTGGTCAGACTTCTATTAGTATTCATACTACCAATAG
AAACTTAATAGGTGATATACTGGCTGGACGAGGTGAGTCATGCTTATAATCCCAGCACTTTGGGAGGCCAAGGCGGCAGATCACTTGAGGTCAGGAGTTC
AAGATGAGCCTGGTCAACATGGTGAAACCCTGTCTCTCCTAAAAATAAAAAATTAGCTGGGTGTGGTGGCACATGCCTGTAATCCCAGCTACACAGGAGG
CTGAGGGAGGAGAATCGTTTGAACCTGGGAGGCGGAGGTTGCAGTGAGCTGAGAATGCACCATTGCACTCCAGTCTGGGTGACAGAGCGAGACTCCATCT
CAAAAAAAAAAAAAGAGTGCTTTAGTCCCTAAAATGATTTTACATTCAAACTAATCCTTCTCAGAGTGTACATTTCTTTAGCAGTATCATCAGCTATTAG
GTTGGTGCAAAAGTAATTGCAGTTCTTGCCTTTAGTAATGGCAACTCAAATAGTATTTTGGCCTCATGCAGTGTGGTGGACTAGAGCTTACTTAACCTTG
GGCTCTTAGAATCTTACGTTGGGGAACTGTGGGCCCAGGGCCCCTGTTCTTATAAAGCTTTATTGGAACATACCATGCCCATTCGTCTGCATGTTGACTT
TGGCTGCTTTTGCATCACACAGTGCCCAAAGAGTAAAATATTTGCTTTCAACCCATTTAAGAAAAGTTTGCCAACTCCTGAAGTGAAGAAGATAGGCAAA
TCTCAATACCCTTGTAAGAGAGAACTTACGACTTTAATAGTTTTTGTCTTAGGAGAAAGATTATGAAGAACCTATAGTTTCCTCACCTAAATGTTCTTGC
CCTTGGCAGTGAGCAAGATAAGAGTTTTCGCAAATTTTATCCAGATGTATACATAGATTTTATACAAGATAGATACATAGATATTAACAATTTTATGATT
GCTTATTGTTTTAAAATACACTTAAATCCTAGTATTCTTGGGTGCATAGCTATGTTAGTGAACCATTAACTGAAATTTGGCTTTTGGTCTCTAAAAAATT
GAAAGCATGTTGAAGTTGGCAGGATTATTTTTTAAAGCTGTTAGATAACTGGGAAGCTAGAAATTTAAGGTTTTTTAAAAAGACATTTTGTTTTCATTCC
AGCTAAACCCACAGTTCAGCCCTCCCCTTCTACAACTTCCAAGACAGTTACTACATCAGGTACAACAAATAACACTGTGACTCCAACCTCACAACCTGTG
CGAAAGTCTACCTTTGATGCAGCCAGTTTCATTGGAGGAATTGTCCTGGTCTTGGGTGTGCAGGCTGTAATTTTCTTTCTTTATAAATTCTGCAAATCTA
AAGAACGAAATTACCACACTCTGTAAACAGACCCATTGAATTAATAAGGACTGGTGATTCATTTGTGTAACTCACTGAAGCCAAAATACTATCTTTTAAG
ATGTCCCACATGGAAGACGCTATTCCAGGATCTTTAAATTTCCATGGATGCATATAGGATGTTTGGGAGCATCATCCGTGAAGAAAAAATCAATTAAATC
ATTGTGTTCAACAGGAATATTTAAAATATTCTGCATGAATCCTGTGGCTGTCTTATTTTAAATAGCTGCTGCTGTGGGATTATATTTTTTTTCCTTAACA
TGCCAAATATAACTTTCTGAAAGTGATGGAAAATGTTGTCTTGTGCAGACAACATCATGGCTCTTGGCAGTTTAAATTTAGTAATTTTAATTTAGTGAAC
AGAATTGAGAAGAACGTGCCAAATGAGAATCAATTAGGTGGATTTTTGGCTGTCATTTCAAAAGTGGAATAAATTTATTAATTTAGTAGTACTAAATGGT
ATCCTTAGATTAAAATTTTGTGCTTGATAACAGCTGTTTTTTCTACATTAGAAATAAGATGCCACACAAGGAACTACATTCCAGATTTAAAGAAATGAAA
GGATACCATTAGTGTGTATAACAGATTATTGTTCATACTTGTAAAGCATCTTATGTCATTGAGAATATAAAGAACAGTGCCTTAGAAGACAGTGAAAGGT
AAGCTCTAGCTTAATGTCTATGATTTGTTCTTTGACATTAAGGAAGGTAAGGATTGGTCAGAGGATGTAACTTGATGTGAGCAGTAGTAAACCTGTTTTA
GATATCATACTGTTAATATTTTATTGAAAATTTATTTCAGAGCGGAGAAACTTAAGCTAAAGTCTGTTATACAGAATTGAAAGCCTTCGTATCTTGAACC
TCCCAACATTTTTCTTATGGCTGTTGAAAAGTATAGAGCTAAATTGATTTAATTACACTTTCCTTTGTACTTTAAAAAAAAGTATGCTAGCACTATTGTA
CCTTGAAAGGATTTCCACCAGACTGTCTTGAGTAGTGACTTCTTTGGTGAGGCAAGAAGGATATACATTATTTTAGAATCATTTACTATTTAAATGAGAC
AATCATATTATTTTAGAATCATTTATTTTAAATGAGACAATCATTTTAAGTTTTAAGATAACAGAAGTGACCAATGTAATTTCACAACACCTAAGGATTT
TTTGGTTGATCAGGTTACTGTAGATTTTTACTGATTGTCCTGGATGAATAGACTGTGCTTTTTCTTTTTCTCTCCCTTCCTTCTTGGTTTCCCATAGTAT
AATAAGCATGCATACTTTAACTTCTATAGTTTTCTCCTTTAGAGGGTCGTCTTCAGTTTTAGAGGTTTACTTCTCCCTTGCCTTTGACTCATTGGACTAG
TGCAGAGGCTTTAAGTAGTTTAAAATGGGCTTTTGCTTTTCTAGGTCATTAACGTTTTTTATTTAGTTTCTTTAGCCAATAGTGGCTGAGTTTCGCACTT
GATTTTCAATATTTTATAGTAAGAAATGACAAACTGCTTTGTTTCATTTCATAAACAAACTCTGCATTTAGATAACTATTAAAGGTTGTTAAGATGAAGA
TTTACTGTTTCTTTGTTACTCGTTGGTACAGCTGTTTGTTTTACTTGCACATTTGTACATATACTTAATGTTTTCAAGTGCCTTAATTGTTTAAAATCTC
TGGCTTCAAAGTTTCTTGGGGAAAGGTCGGTTTACCTCACATTTTTTGTTTCCATTAGTAATATTCTAGGTACCTCACAAAATGTATTATGGTGCCATGG
CTGTTAGTTTTTAGTGAGTGCTGTAGGATTAATTCGAAAATAGGCAGAATTCCATTCCTCCCAAGGTGGCAAAAATTAGCTATACTGATGTAATTGTCAT
TTACCTGGGTATGAATTCCCTGACACACATTCATGTCAACATATGTAGCAAATTTTGTGAAAACATAACAATTTGAAGCTTCTGTAATTTTGAGCACTGC
TCTAACAACAAGCATAATATAAAATTAGTTAGATTTTGCAAGTCTACAAATGAGCTCTTGCAACAGAACTCACAGCCTTTTTACTTTTTTCCCCTAACTT
TAGCAATGTAGTATCTTGAGCCATTAATTTTTGGGTTTTTTTAAAATCCAGAAGGTATATAGAAACCTTTTCAGATTTTTCATCTGATTTGTTCTTGCAG
ATGTTCTTCTATCAAATACCTTATTTTACCTTACAGATATTTGTTGCACAGGCAGATACTGCTGTATTTAGACATTTCTATTTCAGTTCATTAAAAACTG
CAAAACCAATCTGTATCATGTACCAAACTGACTTAAAATAAATCTACATGTTTATTGAATTAA

Expression



Full and truncated open reading frames discovered in TCONS_00189925

In silico ORF/peptide predictions
Nothing found.


RiboTaper predictions from Ribo-Seq data (HEK293 cell line)
Nothing found.

BLAST search results

No hits found.