Detailed information on ENST00000415861

lncRNA-RNA interactions

Number of interactions: 9

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
ENST00000511184 E74-like factor 2 (ets domain transcript... nonsense mediated decay ENST00000415861 528 302 CDS_UTR Trans
TCONS_00030165 antisense novel protein coding ENST00000415861 526 301 UTR3 Trans
TCONS_00041296 RIC3 acetylcholine receptor chaperone novel protein coding ENST00000415861 617 298 UTR3 Trans
TCONS_00041298 RIC3 acetylcholine receptor chaperone novel protein coding ENST00000415861 617 298 UTR3 Trans
TCONS_00161618 interferon gamma receptor 2 (interferon ... novel protein coding ENST00000415861 504 296 UTR3 Trans
TCONS_00170642 solute carrier family 6 (neurotransmitte... novel protein coding ENST00000415861 554 299 UTR3 Trans
TCONS_00189916 doublecortin-like kinase 2 novel protein coding ENST00000415861 557 301 UTR3 Trans
TCONS_00189917 doublecortin-like kinase 2 novel protein coding ENST00000415861 557 301 UTR3 Trans
TCONS_00189925 doublecortin-like kinase 2 novel protein coding ENST00000415861 557 301 UTR3 Trans

Sequence

>ENST00000415861 (4963 nt)
GCTGGGTAATGAGAACCAAATTGCAAATTTGCAGAATTTTTTTCCTAACATTGTCAAACAATTGGTAATAGTGTTTTGAGATTGAACAGAATTTGATGTG<br />TTTAATTTGTAAAGTGTATTTTTTTGTGGTTACACAGAAGCAGTAAAAACCTTGACAGAAATAATGAGCTTTAACATAACCACAGCCTCTAATCTAAGAA<br />TTCTGTGTAAGGACCAGTCTTACCAGAGATAAGGTCAAATATTTTCCTGTAAGATTTTCTCAGCATGGAGAGTTGAGAGAACTGTTTAATCAAGAGCAGG<br />ATGGATGGAAGTATGTACAACAATGCTTGAAGTAAGAGGGAAAAAAGAAAGCAAATGGGTCTGAACATATCCATCAGTATTATTTGTATATCACCTATTA<br />GCTTCTAAGTAGTATCAATATTAATAAAAGAAGTCTTAAGCTCTCTGTGACTCATGGTCATGTGAAAATTAGAATACCTTAGTTTCCTAGGATTCAGTCA<br />ACCTTGGGATTATGGGTAGTCAGCCTGTTACGAGAGTCCTGGTCTTTAAAGATCTACTTTTAGCAACAATTCAGGTATTTAGCAATATCTGAAAACTGTC<br />AAGCCCTGCTCTTTTAGTGTATATTTACTGTTAAAGCACAGAACTTCCTCTTTTATATTAGTAGAATTTGGGAGGATGCTGATTCCTATTGAGGTTTTTG<br />TTCGATTGTTTGAAAGTCTAATGCAGTGAAAAGATTACTCATTTCTGTGCTTCATCAACAGTTATTTGGCACCCTTTCCCTGTCTTTCGTGGGTTAAGCA<br />TATCACTTTGAAGTCTGTTCAGTTATGTACTTTAAACAGAAGTAACATTTGTTTTCCAAATTCTCTTTAGCCTTCAAACCCTTTTTTCTGAAATAGTACA<br />AAAATGAATGTTTGCATAGCACCTTACATTTTTATAAAAATATAAATCTCATATGATTAATCTTCCTCATCTTTCCCCAGATCATCCCTAGCGGCCCACC<br />AGCATAAGCATATCCTCATATTGAAGCCCTTGCACTCTGAAGCCTGACTTACCTAATGATTTCCTGAGACAAAATAAGCTCTCTTAGCTAGTGACTCCTA<br />TAGTGCACTTTCCAAAAATTTGAACCCTACCCTTAGGACAACCTCTTAATGAAACCTTTCTCAAATGCTCCAGCAAACTTTGAATTTATTTGGTAGCCAT<br />TTGGATGTTAGAAAAAATGTTAATTTGTAGAAACTATATTCACATCCTTCCTTTCTGAAAGCCTTGGTCAGACTTCTATTAGTATTCATACTACCAATAG<br />AAACTTAATAGGTGATATACTGGCTGGACGAGGTGAGTCATGCTTATAATCCCAGCACTTTGGGAGGCCAAGGCGGCAGATCACTTGAGGTCAGGAGTTC<br />AAGATGAGCCTGGTCAACATGGTGAAACCCTGTCTCTCCTAAAAATAAAAAATTAGCTGGGTGTGGTGGCACATGCCTGTAATCCCAGCTACACAGGAGG<br />CTGAGGGAGGAGAATCGTTTGAACCTGGGAGGCGGAGGTTGCAGTGAGCTGAGAATGCACCATTGCACTCCAGTCTGGGTGACAGAGCGAGACTCCATCT<br />CAAAAAAAAAAAAAGAGTGCTTTAGTCCCTAAAATGATTTTACATTCAAACTAATCCTTCTCAGAGTGTACATTTCTTTAGCAGTATCATCAGCTATTAG<br />GTTGGTGCAAAAGTAATTGCAGTTCTTGCCTTTAGTAATGGCAACTCAAATAGTATTTTGGCCTCATGCAGTGTGGTGGACTAGAGCTTACTTAACCTTG<br />GGCTCTTAGAATCTTACGTTGGGGAACTGTGGGCCCAGGGCCCCTGTTCTTATAAAGCTTTATTGGAACATACCATGCCCATTCGTCTGCATGTTGACTT<br />TGGCTGCTTTTGCATCACACAGTGCCCAAAGAGTAAAATATTTGCTTTCAACCCATTTAAGAAAAGTTTGCCAACTCCTGAAGTGAAGAAGATAGGCAAA<br />TCTCAATACCCTTGTAAGAGAGAACTTACGACTTTAATAGTTTTTGTCTTAGGAGAAAGATTATGAAGAACCTATAGTTTCCTCACCTAAATGTTCTTGC<br />CCTTGGCAGTGAGCAAGATAAGAGTTTTCGCAAATTTTATCCAGATGTATACATAGATTTTATACAAGATAGATACATAGATATTAACAATTTTATGATT<br />GCTTATTGTTTTAAAATACACTTAAATCCTAGTATTCTTGGGTGCATAGCTATGTTAGTGAACCATTAACTGAAATTTGGCTTTTGGTCTCTAAAAAATT<br />GAAAGCATGTTGAAGTTGGCAGGATTATTTTTTAAAGCTGTTAGATAACTGGGAAGCTAGAAATTTAAGGTTTTTTAAAAAGACATTTTGTTTTCATTCC<br />AGCTAAACCCACAGTTCAGCCCTCCCCTTCTACAACTTCCAAGACAGTTACTACATCAGGTACAACAAATAACACTGTGACTCCAACCTCACAACCTGTG<br />CGAAAGTCTACCTTTGATGCAGCCAGTTTCATTGGAGGAATTGTCCTGGTCTTGGGTGTGCAGGCTGTAATTTTCTTTCTTTATAAATTCTGCAAATCTA<br />AAGAACGAAATTACCACACTCTGTAAACAGACCCATTGAATTAATAAGGACTGGTGATTCATTTGTGTAACTCACTGAAGCCAAAATACTATCTTTTAAG<br />ATGTCCCACATGGAAGACGCTATTCCAGGATCTTTAAATTTCCATGGATGCATATAGGATGTTTGGGAGCATCATCCGTGAAGAAAAAATCAATTAAATC<br />ATTGTGTTCAACAGGAATATTTAAAATATTCTGCATGAATCCTGTGGCTGTCTTATTTTAAATAGCTGCTGCTGTGGGATTATATTTTTTTTCCTTAACA<br />TGCCAAATATAACTTTCTGAAAGTGATGGAAAATGTTGTCTTGTGCAGACAACATCATGGCTCTTGGCAGTTTAAATTTAGTAATTTTAATTTAGTGAAC<br />AGAATTGAGAAGAACGTGCCAAATGAGAATCAATTAGGTGGATTTTTGGCTGTCATTTCAAAAGTGGAATAAATTTATTAATTTAGTAGTACTAAATGGT<br />ATCCTTAGATTAAAATTTTGTGCTTGATAACAGCTGTTTTTTCTACATTAGAAATAAGATGCCACACAAGGAACTACATTCCAGATTTAAAGAAATGAAA<br />GGATACCATTAGTGTGTATAACAGATTATTGTTCATACTTGTAAAGCATCTTATGTCATTGAGAATATAAAGAACAGTGCCTTAGAAGACAGTGAAAGGT<br />AAGCTCTAGCTTAATGTCTATGATTTGTTCTTTGACATTAAGGAAGGTAAGGATTGGTCAGAGGATGTAACTTGATGTGAGCAGTAGTAAACCTGTTTTA<br />GATATCATACTGTTAATATTTTATTGAAAATTTATTTCAGAGCGGAGAAACTTAAGCTAAAGTCTGTTATACAGAATTGAAAGCCTTCGTATCTTGAACC<br />TCCCAACATTTTTCTTATGGCTGTTGAAAAGTATAGAGCTAAATTGATTTAATTACACTTTCCTTTGTACTTTAAAAAAAAGTATGCTAGCACTATTGTA<br />CCTTGAAAGGATTTCCACCAGACTGTCTTGAGTAGTGACTTCTTTGGTGAGGCAAGAAGGATATACATTATTTTAGAATCATTTACTATTTAAATGAGAC<br />AATCATATTATTTTAGAATCATTTATTTTAAATGAGACAATCATTTTAAGTTTTAAGATAACAGAAGTGACCAATGTAATTTCACAACACCTAAGGATTT<br />TTTGGTTGATCAGGTTACTGTAGATTTTTACTGATTGTCCTGGATGAATAGACTGTGCTTTTTCTTTTTCTCTCCCTTCCTTCTTGGTTTCCCATAGTAT<br />AATAAGCATGCATACTTTAACTTCTATAGTTTTCTCCTTTAGAGGGTCGTCTTCAGTTTTAGAGGTTTACTTCTCCCTTGCCTTTGACTCATTGGACTAG<br />TGCAGAGGCTTTAAGTAGTTTAAAATGGGCTTTTGCTTTTCTAGGTCATTAACGTTTTTTATTTAGTTTCTTTAGCCAATAGTGGCTGAGTTTCGCACTT<br />GATTTTCAATATTTTATAGTAAGAAATGACAAACTGCTTTGTTTCATTTCATAAACAAACTCTGCATTTAGATAACTATTAAAGGTTGTTAAGATGAAGA<br />TTTACTGTTTCTTTGTTACTCGTTGGTACAGCTGTTTGTTTTACTTGCACATTTGTACATATACTTAATGTTTTCAAGTGCCTTAATTGTTTAAAATCTC<br />TGGCTTCAAAGTTTCTTGGGGAAAGGTCGGTTTACCTCACATTTTTTGTTTCCATTAGTAATATTCTAGGTACCTCACAAAATGTATTATGGTGCCATGG<br />CTGTTAGTTTTTAGTGAGTGCTGTAGGATTAATTCGAAAATAGGCAGAATTCCATTCCTCCCAAGGTGGCAAAAATTAGCTATACTGATGTAATTGTCAT<br />TTACCTGGGTATGAATTCCCTGACACACATTCATGTCAACATATGTAGCAAATTTTGTGAAAACATAACAATTTGAAGCTTCTGTAATTTTGAGCACTGC<br />TCTAACAACAAGCATAATATAAAATTAGTTAGATTTTGCAAGTCTACAAATGAGCTCTTGCAACAGAACTCACAGCCTTTTTACTTTTTTCCCCTAACTT<br />TAGCAATGTAGTATCTTGAGCCATTAATTTTTGGGTTTTTTTAAAATCCAGAAGGTATATAGAAACCTTTTCAGATTTTTCATCTGATTTGTTCTTGCAG<br />ATGTTCTTCTATCAAATACCTTATTTTACCTTACAGATATTTGTTGCACAGGCAGATACTGCTGTATTTAGACATTTCTATTTCAGTTCATTAAAAACTG<br />CAAAACCAATCTGTATCATGTACCAAACTGACTTAAAATAAATCTACATGTTTATTGAATTAA

Expression



Full and truncated open reading frames discovered in ENST00000415861

In silico ORF/peptide predictions
>peptide 1 (63 aa)
MPIRLHVDFGCFCITQCPKSKIFAFNPFKKSLPTPEVKKIGKSQYPCKRELTTLIVFVLGERL


RiboTaper predictions from Ribo-Seq data (HEK293 cell line)
Nothing found.

BLAST search results

Best hit to NONCODE v4:
NONHSAT114396 (Evalue: 0)

Best hit to Swiss-Prot:
sp|Q8WTZ3|YS049_HUMAN (Evalue: 2.0E-25)