Detailed information on ENST00000416381

lncRNA-RNA interactions

Number of interactions: 3

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
ENST00000553127 spermatogenesis associated, serine-rich 2 protein coding ENST00000416381 548 298 UTR3 Trans
TCONS_00030588 cytoplasmic polyadenylation element binding protein 3 novel protein coding ENST00000416381 538 298 UTR3 Trans
TCONS_00193753 alcohol dehydrogenase 7 (class IV), mu or sigma polypeptide novel protein coding ENST00000416381 508 298 UTR3 Trans

Sequence

>TCONS_00193753 (2011 nt)
CCCACAGGACCTTGCAGTGGGATTTCATCTGCACCATCAGCTTCTTCAGAGAGAGAGGTTGTTGACTCTTCATGTGGATGTCTGAGCTCATATCAGGTGT
CTGAAAGAGGCAGATTCTGAGGATTTGGGTCATGATGGCTGCCAAAGCTTCTACTCCTGACTTAAAGGGCAACAATCCTAGGAGACCACCAGCACTTACA
TCCCTGGTAGGACATGACACCTGCTTATGGCTCAGAAGTGACAAAAGAGAATTATCAGGATGGCAGTCCTTATAACCAGATGCTTATCAACATTCTTCAC
TACATTCTGAAGATGAATTTCTACAAGGGAAATTGTTTATGTAAGTGGTGTGTACCCTTTGATATGTATTGACATAGTGGCACACATAGAGTTGTGCCAT
TTAAACTCCCCAAGGGGAGGCATGTGAGGTCGGCCACAGAGGACTGAAGAAATTAGTTAATGCTGACATCCTATCACATAGGGTGGGTCCTGGACTCCGT
CATGGACCTGCTGTCATGCCATTGCCACAATTGGAAGACGTGGAAGTGATCAGATGCAATCAAATTTTGTACACAAGCACATCCTGATGTAGCGATGAGG
GAAAGGGGGAAGAGGAATGATCATTGCTTGGACTTACAGGACAGAGGCAGAAGGGCTAGGACACAGGCACTCTTTATACGCATTCTTTTTTTTTTTTTTT
TTTTGAGACGGAGTATCGCCTGTTGCCAGGCTGGAATGCAATGGTGTGATCTCAGCTCACTGCAACCTCCGCCTCCTGGGTTCAAGCGATTCTCCTGCCT
CAGCCTCCTGAGTAGCTAGGACTGTAGGCACGCACCACCACGCCCAGCTAATTTTTTGTATTTTTAGTATAGTCGAGGTTTCACCATGTTGGCCAGGATG
GTCTCCATCTCTTGAGCTCGTAATCCGCCTGCCTCGGCCTTCTACAGTGCTGGGATTACAGGCGTCAGCCACCACACCCGGCCCTATATGCATTCATTTT
TATGTAAAACATATGCATCAATTCTTTTGTATGAAAACGTTTGGTCATTACTGTGGTACAACAGAAGACCAGGTCAGTACCATATTTTTTTTTCATATGT
ACACGGATTTTTATTTTGTTTTAGACATTGTCTTACACACAATAGACATTCAGTATTTGTTGAAATTAATGAAAGAAAAGAGAAACATGAAAACGGTCTG
AGAAGACAATAATCTGCTTTTTAATTTATAGACAGCAATTAGGTCAAACAATTATAGCAATGATGACAAAGAACAATATCTGAGGTACACTCAAAACCTT
ATGAGGGTTATTTGCCAGTTTTCCTGGCTATTTCTACACCCTTTGATCTCTAGTGAATGTTTCTACTTACAACTACATATTTTGTAAGTTTTGCCTACTG
TATTTCAATCAACACTGTAAAAAATGAAGAGAGTCTTTTTGGTTCAAATTTGGTTTTTAGTTAATTATGTGATGTGTATATGATTTTTTGTTACCTTTTC
TGTATAGATATCAGGAGAATCGAAAATATGTTGATGGTGGAATTGTGGTATGACATTTTTACTGACTACTACTCTGCAAAAGTTTTATCTATGAGCTCTA
TGGGTTGTTCCTGGCTTTTGAAAATTTACTTTAAGGAAGTGTTTTTGGAAATGGATTATAAGTATACAAGTATGCAATCTTATGTATTTGCAACTGTCTA
AGATGTTATGATACTTTCCTCCCTGCAATCTGGCATTCATCCATTCAAGACATTTTAATTGAACTCTTACAATGTTCTTAATACTATGATAAGCCCTGAA
GGTAAACTGTGACTAAAAATGTTGCAGGATAAAATACAGGATTCCTAGTTAAATTTGAATTTTAGATAAACAACATTCTTATACTAAAAATTATTCCATG
TTTATCTGAAATTCAAATTTAGCTGAGTGTCCTGTAACTTTTTATTTTATTTGTTTACTTGTTTGTCTGTGATAAATATGGCAGCCCTAGTAAAAATAAA
TATAGCCCCTGA

Expression



Full and truncated open reading frames discovered in TCONS_00193753

In silico ORF/peptide predictions
Nothing found.


RiboTaper predictions from Ribo-Seq data (HEK293 cell line)
Nothing found.

BLAST search results

No hits found.