Detailed information on ENST00000417591

lncRNA-RNA interactions

Number of interactions: 5

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
ENST00000263955 serine/threonine kinase 17b protein coding ENST00000417591 616 306 UTR3 Trans
ENST00000397755 zinc finger family member 788 processed transcript ENST00000417591 501 256 noncoding Trans
ENST00000549365 DNA-damage regulated autophagy modulator 1 nonsense mediated decay ENST00000417591 540 277 CDS_UTR Trans
ENST00000593250 centrosomal protein 76kDa nonsense mediated decay ENST00000417591 597 284 UTR3 Trans
TCONS_00153158 serine/threonine kinase 17b novel protein coding ENST00000417591 616 306 UTR3 Trans

Sequence

>TCONS_00153158 (989 nt)
GGGTGACACCAAAAAAATCAGTGTTGCATATGGAAACTAAAAAAAAAGAAAGTTATGTAATAAGATGTGGTACAGAAAGGTAAGACCAAAGAACACCTTT
CTTATTATGATAATTAAATTTCTGACTCTGGTCCCAGAATAATAAAATATCAAATATCAAAAGCTTATGTACCATGATTTTGCTTCCTCTATAAGTGGCA
CATCTTTATTGTCCATTATATTTTGTCCAAAGAACTAAAGGATCTGCAGCCTCTAGCTTGACATACTTTGCATTATCAGGATCAGAAAATAAAATAATTC
CTTAAGTCACAAGCTTCCCTGGGCAGTTTTACTACTACTCTTCTGCACAACACATTAAAGGCATTTTATGCAATTGTTCAGCAGCAAAAGCAAAGTTTAC
ATGTTACATCTTTTTTTTTTTTTTCTTTTTTTTTTTTGAGACAGAGTCTTGCTCTGTCGCCACCCAGGCTGGAGTACAGTGGCTTACACCTGTAATGCCA
GCACTTTGGGAGGCCAAGGCAGGTGGATCATTTGAGGTCAGGAGTTCCAGACCTGCCTGGCCAACATGGTGAAACCCCATCTCTACTAAAAATACAAAAA
TTAGCAGCGTGTAGTGGATACATGCCTGTAATCCCAGCTACTTGGGAGGCTGGGGCAGGAGAACTGCTTGAACCCTGGAGGCGGAGGTTGCAGCGAGCTG
AGATCATGCCACTGCACTCCAGCCAGGGCGACAGAGTGACGCTCCATCTCAAAATAAAGAAATGAAATGAAATGAAATGAAAAGGAAAGAAAGAAAAAAG
AAAGAAAGAAAGAAAGGGAAAGAAAGAAAAGAAAGGAAGGGAGGAAGGAAGGAAAGAAGGAAGGAAGGAAAGACAGACATCTAAGATATATCAAATGTAT
CTGTGGGTACAAGAGGGTAGGTGCGGCACAGAGGGAGTGGGAAAATCACTATAAAGGGTAAAAGTAGCAAAATACAATGAGAGGGGCCTT

Expression



Full and truncated open reading frames discovered in TCONS_00153158

In silico ORF/peptide predictions
Nothing found.


RiboTaper predictions from Ribo-Seq data (HEK293 cell line)
Nothing found.

BLAST search results

No hits found.