Detailed information on ENST00000418393

lncRNA-RNA interactions

Number of interactions: 4

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
ENST00000209718 keratin 23 (histone deacetylase inducible) protein coding ENST00000418393 530 169 CDS Cis
ENST00000436344 keratin 23 (histone deacetylase inducible) protein coding ENST00000418393 530 169 CDS Cis
ENST00000582754 keratin 23 (histone deacetylase inducible) retained intron ENST00000418393 530 169 noncoding Cis
TCONS_00111258 keratin 23 (histone deacetylase inducible) novel protein coding ENST00000418393 530 169 CDS Cis

Sequence

>TCONS_00111258 (814 nt)
CAGAACAGTGGCCCACACTCCTAGAATTTGAGAAAATGGCATCTTCTTCAGAGGACAGAGGTCAATCTCCAGGGCCTGGAATGTGCGCTTCAGTTCGTGG
ATGTCACCTTGTCTGCTCTGCACAGTGGCTGGACTGGCTGCCTCCTGGGACATGGCTGCAGACTGTGGGACCAAGCAAGGCAAAGGCGTCAGCATTGGGA
CCTCATGGAAATGCAACCTTTGGGAAGACCTTAATCAGATCTTCCCTGGGACCTGTATCCACCTTCACATTGACATTGAAGTCACTTGGCACATGATGCT
TCTCCATTTCCTATTTAATAACAGAGAAAGGAAATGAACCGGCTTTGACAATCAGAAGGCTGGATTGCCATGTTGATTGGCAGTGGTCGGATGATGTCTA
TTATTGTATCATCAAATTCCCTGATGTTTTCCTCTCTGGCCTGCATTCTGCTGTTAAGCCCATCTCCATTGAGGTTTCTATTTTGGTTCTATGGTATGTT
TCAGTTCTGAAATTTCCACTGGAGTCTTTCCATCTTCTTCATTGAGTCTTCTCTATTTTTGCATTTGTTGTAAGAGTTTATTGAAGCATTGCTTACTGAA
GCATTTTTATGATGACTATTTAAAAATCATTGTCAATAAGTAAAATAGTGTAACTGGATGTTTGTAACACCAAAGATACATGCTTGAGGGGATGGACACC
CCATTCTCCATGTGATTATTACACATTGCATGCCTGTGTCAAATCATCTCATGTACCCCATAAATATATACATCTATGTACCCAGAAAAATAACAAATAA
AAAGTTAAAAACCCT

Expression



Full and truncated open reading frames discovered in TCONS_00111258

In silico ORF/peptide predictions
Nothing found.


RiboTaper predictions from Ribo-Seq data (HEK293 cell line)
Nothing found.

BLAST search results

No hits found.