Detailed information on ENST00000420877

lncRNA-RNA interactions

Number of interactions: 81

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
ENST00000276431 tumor necrosis factor receptor superfamily, member 10b protein coding ENST00000420877 562 277 UTR3 Trans
ENST00000310045 dermatan sulfate epimerase-like protein coding ENST00000420877 624 296 UTR3 Trans
ENST00000338758 parvin, beta protein coding ENST00000420877 648 303 UTR3 Trans
ENST00000357491 zinc finger protein 43 protein coding ENST00000420877 603 290 UTR3 Trans
ENST00000375234 AhpC/TSA antioxidant enzyme domain containing 1 protein coding ENST00000420877 580 305 UTR3 Trans
ENST00000418314 mannosyl (beta-1,4-)-glycoprotein beta-1,4-N-acetylglucosaminyltransferase protein coding ENST00000420877 545 292 CDS Trans
ENST00000432564 hydroxycarboxylic acid receptor 1 protein coding ENST00000420877 617 293 UTR3 Trans
ENST00000446045 AhpC/TSA antioxidant enzyme domain containing 1 protein coding ENST00000420877 580 305 UTR3 Trans
ENST00000448612 WD repeat domain 27 protein coding ENST00000420877 603 304 CDS Trans
ENST00000467462 inter-alpha-trypsin inhibitor heavy chain family, member 4 processed transcript ENST00000420877 568 300 noncoding Trans
ENST00000475187 THO complex 5 retained intron ENST00000420877 564 293 noncoding Trans
ENST00000494969 colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage) protein coding ENST00000420877 657 293 CDS Trans
ENST00000511184 E74-like factor 2 (ets domain transcription factor) nonsense mediated decay ENST00000420877 647 299 CDS_UTR Trans
ENST00000569455 cadherin 13 processed transcript ENST00000420877 556 309 noncoding Trans
ENST00000572705 transient receptor potential cation channel, subfamily V, member 1 protein coding ENST00000420877 630 301 UTR3 Trans
ENST00000593250 centrosomal protein 76kDa nonsense mediated decay ENST00000420877 570 299 UTR3 Trans
ENST00000594012 zinc finger protein 43 protein coding ENST00000420877 603 290 UTR3 Trans
ENST00000614987 ribosomal protein S6 kinase, 90kDa, polypeptide 5 protein coding ENST00000420877 601 299 UTR3 Trans
TCONS_00001594 lincRNA novel protein coding ENST00000420877 620 291 UTR5 Trans
TCONS_00030130 calcium/calmodulin-dependent protein kinase II gamma novel protein coding ENST00000420877 654 283 UTR3 Trans
TCONS_00034643 CD82 molecule novel protein coding ENST00000420877 613 289 UTR3 Trans
TCONS_00041296 RIC3 acetylcholine receptor chaperone novel protein coding ENST00000420877 651 300 UTR3 Trans
TCONS_00041298 RIC3 acetylcholine receptor chaperone novel protein coding ENST00000420877 651 300 UTR3 Trans
TCONS_00046540 sestrin 3 novel protein coding ENST00000420877 602 300 UTR5 Trans
TCONS_00053851 transmembrane protein 263 novel protein coding ENST00000420877 610 257 UTR3 Trans
TCONS_00065094 UBA domain containing 2 novel protein coding ENST00000420877 657 297 UTR5 Trans
TCONS_00065097 UBA domain containing 2 novel protein coding ENST00000420877 657 297 UTR3 Trans
TCONS_00065103 UBA domain containing 2 novel protein coding ENST00000420877 657 297 UTR5 Trans
TCONS_00067572 DCN1, defective in cullin neddylation 1, domain containing 2 novel protein coding ENST00000420877 657 301 UTR3 Trans
TCONS_00070307 pecanex homolog (Drosophila) novel protein coding ENST00000420877 643 289 UTR5 Trans
TCONS_00075813 forkhead box N3 novel protein coding ENST00000420877 679 299 UTR5 Trans
TCONS_00075827 forkhead box N3 novel protein coding ENST00000420877 679 299 UTR3 Trans
TCONS_00080928 SH3-domain GRB2-like 3 novel protein coding ENST00000420877 605 293 UTR5 Trans
TCONS_00102930 suppressor of cytokine signaling 7 novel protein coding ENST00000420877 624 289 UTR3 Trans
TCONS_00107851 transient receptor potential cation channel, subfamily V, member 1 novel protein coding ENST00000420877 630 301 UTR3 Trans
TCONS_00107864 transient receptor potential cation channel, subfamily V, member 1 novel protein coding ENST00000420877 632 289 UTR3 Trans
TCONS_00107867 transient receptor potential cation channel, subfamily V, member 1 novel protein coding ENST00000420877 632 289 UTR3 Trans
TCONS_00108999 trans-golgi network vesicle protein 23 homolog C (S. cerevisiae) novel protein coding ENST00000420877 601 297 UTR5 Trans
TCONS_00109000 trans-golgi network vesicle protein 23 homolog C (S. cerevisiae) novel protein coding ENST00000420877 601 297 UTR5 Trans
TCONS_00109009 trans-golgi network vesicle protein 23 homolog C (S. cerevisiae) novel protein coding ENST00000420877 601 297 UTR5 Trans
TCONS_00109011 trans-golgi network vesicle protein 23 homolog C (S. cerevisiae) novel protein coding ENST00000420877 601 297 UTR5 Trans
TCONS_00109012 trans-golgi network vesicle protein 23 homolog C (S. cerevisiae) novel protein coding ENST00000420877 601 297 UTR5 Trans
TCONS_00109013 trans-golgi network vesicle protein 23 homolog C (S. cerevisiae) novel protein coding ENST00000420877 601 297 UTR5 Trans
TCONS_00109014 trans-golgi network vesicle protein 23 homolog C (S. cerevisiae) novel protein coding ENST00000420877 601 297 UTR5 Trans
TCONS_00109427 serine hydroxymethyltransferase 1 (soluble) novel protein coding ENST00000420877 640 297 UTR3 Trans
TCONS_00119478 zinc finger and BTB domain containing 7C novel protein coding ENST00000420877 609 294 UTR5 Trans
TCONS_00119478 zinc finger and BTB domain containing 7C novel protein coding ENST00000420877 609 296 UTR5 Trans
TCONS_00119512 zinc finger and BTB domain containing 7C novel protein coding ENST00000420877 628 289 UTR3 Trans
TCONS_00123889 ribosomal protein SA pseudogene 58 novel protein coding ENST00000420877 632 285 UTR5 Trans
TCONS_00123899 ribosomal protein SA pseudogene 58 novel protein coding ENST00000420877 632 285 UTR5 Trans
TCONS_00132233 zinc finger protein 43 novel protein coding ENST00000420877 603 290 UTR3 Trans
TCONS_00132247 zinc finger protein 43 novel noncoding ENST00000420877 647 295 noncoding Trans
TCONS_00140732 NCK adaptor protein 2 novel protein coding ENST00000420877 603 298 UTR5 Trans
TCONS_00147093 ATPase family, AAA domain containing 2B novel protein coding ENST00000420877 646 300 UTR3 Trans
TCONS_00147100 ATPase family, AAA domain containing 2B novel protein coding ENST00000420877 646 300 UTR3 Trans
TCONS_00147106 ATPase family, AAA domain containing 2B novel protein coding ENST00000420877 646 300 UTR3 Trans
TCONS_00148698 WD repeat containing planar cell polarity effector novel noncoding ENST00000420877 659 282 noncoding Trans
TCONS_00148704 WD repeat containing planar cell polarity effector novel protein coding ENST00000420877 659 282 UTR3 Trans
TCONS_00148705 WD repeat containing planar cell polarity effector novel protein coding ENST00000420877 659 282 UTR3 Trans
TCONS_00161618 interferon gamma receptor 2 (interferon gamma transducer 1) novel protein coding ENST00000420877 627 295 UTR3 Trans
TCONS_00163084 T-cell lymphoma invasion and metastasis 1 novel protein coding ENST00000420877 618 292 UTR5 Trans
TCONS_00185321 transferrin receptor novel protein coding ENST00000420877 681 297 UTR5 Trans
TCONS_00186316 KIAA0232 novel protein coding ENST00000420877 606 305 UTR3 Trans
TCONS_00187473 spermatogenesis associated 18 novel noncoding ENST00000420877 612 299 noncoding Trans
TCONS_00190276 transmembrane protein 144 novel protein coding ENST00000420877 664 287 UTR3 Trans
TCONS_00194682 E74-like factor 2 (ets domain transcription factor) novel protein coding ENST00000420877 647 299 UTR3 Trans
TCONS_00194686 E74-like factor 2 (ets domain transcription factor) novel protein coding ENST00000420877 647 299 UTR3 Trans
TCONS_00202828 myotubularin related protein 12 novel protein coding ENST00000420877 698 299 UTR3 Trans
TCONS_00213191 tubby like protein 4 novel protein coding ENST00000420877 662 290 UTR5 Trans
TCONS_00219475 WD repeat domain 27 novel protein coding ENST00000420877 603 304 UTR3 Trans
TCONS_00221037 POU class 6 homeobox 2 novel noncoding ENST00000420877 665 302 noncoding Trans
TCONS_00225245 family with sequence similarity 115, member C novel protein coding ENST00000420877 605 304 UTR3 Trans
TCONS_00225248 family with sequence similarity 115, member C novel protein coding ENST00000420877 605 304 UTR3 Trans
TCONS_00233179 BCL2/adenovirus E1B 19kDa interacting protein 3-like novel protein coding ENST00000420877 617 299 UTR3 Trans
TCONS_00234854 zinc finger and BTB domain containing 10 novel protein coding ENST00000420877 624 277 UTR3 Trans
TCONS_00235393 processing of precursor 1, ribonuclease P/MRP subunit (S. cerevisiae) novel protein coding ENST00000420877 601 299 UTR5 Trans
TCONS_00239255 tumor protein D52 novel protein coding ENST00000420877 615 297 UTR5 Trans
TCONS_00240688 metastasis suppressor 1 novel protein coding ENST00000420877 619 300 CDS_UTR Trans
TCONS_00246881 cyclin-dependent kinase inhibitor 2A novel protein coding ENST00000420877 638 294 UTR5 Trans
TCONS_00247297 family with sequence similarity 166, member B novel protein coding ENST00000420877 627 295 UTR5 Trans
TCONS_00249092 transmembrane protein 245 novel protein coding ENST00000420877 638 281 UTR5 Trans

Sequence

>TCONS_00249092 (2631 nt)
ATTATTGGATGACAGGCTGCCTCCTAGGGGGCTTCTCTGGGCTTGCCATGAAAGCACTTCCGGAGGAAAAGCAGAGCTCCATCAGTCTCTTTTGGAGAGC
TGTGAACGTGACCAGACCTATTAATTACTTAACTGAGGTGCTGAACTTTGAAAATGAAAGTTCCGGTGGGGAGTTCTGTCCTTTCCAGCCTGGGGAGCTC
TGTCAGGGCTCTCCTGAGCGTCTCTTTCAGCTTATCAAGCTCGCTCGGGGACCGTCTCTGCCGCCATGTAGGAAGTGCCTTTAGCCTTCTGCCATGATTG
TGAGGCCTCCCCAGCCATGTGCAACTACTGGGAAAGTGAGGTGCAGAGGTATTTTGCAACGTGCCCACAGAACCCCAGCGAGCCCGTGTTGGAGTTACAA
CTGTGCCTCAGGGAGCATTCTCAGGCAGCATTCTCTTATGCTTCACCGTCTCACAGATGATAAGGTTTCATTCAAGGACTTACAACAGCAACCCGGAGGG
AGCATTCTCAGTGGCTGGTAGATGCCATTTGTACTGAGCAGGACAATTAAGCCCAATTCTGGAAAAATTCTGCTTTCTCTATTCAATGCATTTTATAAAT
GTCTTCACTCAGCACATTTACCCTACTAATTATATTTTGCTTTGTGATCATGGTATGTCATTTGCATTCCTTCAGCACACACTGACTGATGGGGAAGAGA
TGTTGGGTGACCCAGGCAAGCCAAACAGGATTAAAGCCTGCTGTCTCACCAGGTGGATAATCCACTTTGAACACTTGAGAGGGGAGTGTTGAGATCACAC
CCCTTCCCATGGGACATTTTTCTGGGAAATAAAATCGGTGACAAACACCACGCTTGAACACTCACATTGACTCTAGGGTGCAGGCTGAGCTCATCTGGTG
CAGGGGAGTAATGCAGAGGCGAGGCCTGAGTCAGCGCCAGGCACAGGAAGGGGATGCAGGATGCACCACAGCCCATGCCTCTTAGGAGAAAATCTGGGCC
TTCTCCATGGCTGTGTCTCTATTAATTTGCTAAGGCTGCCCAAATAAAGCACCACACATGGGCAGCTTACATAACAGGAATTTATTCTCAGTTCTGGAGG
CCGGCAGTCTGAGATCAAGGTGTCAGCACAGCTGGTTCCTTCTGAGGACTGTGCAGGAGAATCTGTTCCAGGCCTCTCCCTGAACTTCTGGGGGTCACTG
GCCATATTTGGCATTCCTTGGCTTATAGAAGCAATACCCCAATTTCTGCCTTCATCCGCATGTGGCATTCTCCCTGTGTGCGTGTTTCTGTGTCCACATT
TTTCCTTTTTATAAGGATACCAGTCATGTTGGAGGTCTACCCTACTCCTTGATGACCTTATCTTAACTAGTTATATCTGCAACAAACCTATTTCCAAATT
AGGTCACATTCTGAGGTCCTGGGGGTTAGGACTTTAACATATGAATTTTAAGAGGACACAGTCCAACCCATAATAGTAACTTTGTCCCTCTCTCTCTTTT
GACACAATAATGACCCTATGCAGGGATATTTCTAGGTGGCTACTGTCTGTGTGTGTGTGGTAGGGGGACTTCTAGTACTGTTTTGGATTACTGTTGACAG
ACAGCAGCCTGAGGCTAGGAAGCACTTTGGGGCCATGACTTAGAGCAAAGCTAGTAAGTTTTCTCAGGAATTTGAACCCAGAATTTCATCCCCATGGCAC
TTTAATCCAGTACATTTAATGGCTCAGATGACCCTGGCCTTATCAGCCTGGTGCTCTAAGCAGCTGACCTAACAGTGTGTGCATGCGTGTATGCACATGT
GTATGTTATGTGCATATATAAGTGCATACACATAATGTTGGACACAGAAATATCTCTGAGAACTGTCCCTTTATCACCCTTCAGATAAAATTATTCTCAG
CTTGCTTAGTTGCAGTGTTTCTTACTTTGCATCTCCTAACACTTTCATACATTTCTCCCGAAGTGCATAGGCAAGGAGCTTCAACGGAATTCAATGTCAA
CCTGGTCATCTTACCATGATTTCTAGGAAAAAATGTGTGTAATTGGTTCATGCCCTCCTTCTGTACAGATTACAATTCTCCTTTTTTGGCATGAAAACCT
CCATCTGTCTTTTGAAAGCACATGTCACTTATTTATTAAAGTCCTCCCCAACTTGTTCAGGTTGAGTTTCACTAGTACCTTTCTGGAGTATTTTATACCT
ATGTTATAGCCCCATATGTTATACTTTGGATGTCTGTTTACCTGTCTGTAAGACTGTCTGCATAATTCATGGGCCTTGTACAAAATAAGAATTCAGGGAC
TCTTGTTACAAGAAACTATTAAGAATTTCAAGATGGGTCAGGCGCGGTGGCTCACGCCTGTAATCCCAACACTTTGGGAGGCTGAGGCGGGCAGATCACG
AGGTCAGGAGTTCGAGACCAGCCTGGCCAACATGGCGAAACCCTGTCTCTACTAAAAATACAAAAATGAGCTGGGCGTGGTGGTGTCTGCCTGTAATTCC
AGCTACTCAGGAGGCTGAGGCAGGAGAATCACTTGAACCTGGGAGGTGGAGGTTGCAGTGAGCCAAGATCGCACGGTTGCACTTCAGCCTGGGAAATGGA
ATGAGACTCCATCTCAAAAAAAAAAAAAAAAA

Expression



Full and truncated open reading frames discovered in TCONS_00249092

In silico ORF/peptide predictions
Nothing found.


RiboTaper predictions from Ribo-Seq data (HEK293 cell line)
Nothing found.

BLAST search results

No hits found.