Detailed information on ENST00000420918

lncRNA-RNA interactions

Number of interactions: 34

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
ENST00000339732 polypeptide N-acetylgalactosaminyltransferase 15 protein coding ENST00000420918 610 275 UTR3 Trans
ENST00000375120 OTU deubiquitinase 3 protein coding ENST00000420918 531 309 UTR3 Trans
ENST00000375234 AhpC/TSA antioxidant enzyme domain containing 1 protein coding ENST00000420918 505 304 UTR3 Trans
ENST00000391877 delta(4)-desaturase, sphingolipid 1 protein coding ENST00000420918 504 264 UTR3 Trans
ENST00000446045 AhpC/TSA antioxidant enzyme domain containing 1 protein coding ENST00000420918 505 304 UTR3 Trans
ENST00000511184 E74-like factor 2 (ets domain transcription factor) nonsense mediated decay ENST00000420918 514 299 CDS_UTR Trans
ENST00000513143 podoplanin protein coding ENST00000420918 515 302 UTR5 Trans
TCONS_00000720 lincRNA novel protein coding ENST00000420918 519 309 UTR3 Trans
TCONS_00001821 low density lipoprotein receptor adaptor protein 1 novel protein coding ENST00000420918 640 279 UTR5 Trans
TCONS_00001823 low density lipoprotein receptor adaptor protein 1 novel protein coding ENST00000420918 640 279 UTR5 Trans
TCONS_00028040 ankyrin repeat domain 16 novel protein coding ENST00000420918 619 305 UTR3 Trans
TCONS_00030591 cytoplasmic polyadenylation element binding protein 3 novel protein coding ENST00000420918 665 301 UTR3 Trans
TCONS_00030592 cytoplasmic polyadenylation element binding protein 3 novel protein coding ENST00000420918 665 301 UTR3 Trans
TCONS_00053501 anoctamin 4 novel protein coding ENST00000420918 544 308 UTR3 Trans
TCONS_00053502 anoctamin 4 novel protein coding ENST00000420918 544 308 UTR3 Trans
TCONS_00053513 anoctamin 4 novel protein coding ENST00000420918 544 308 UTR3 Trans
TCONS_00053521 anoctamin 4 novel protein coding ENST00000420918 544 308 UTR3 Trans
TCONS_00053527 anoctamin 4 novel protein coding ENST00000420918 544 308 UTR3 Trans
TCONS_00053528 anoctamin 4 novel protein coding ENST00000420918 544 308 UTR3 Trans
TCONS_00085508 neuregulin 4 novel noncoding ENST00000420918 627 281 noncoding Trans
TCONS_00098643 fatty acid 2-hydroxylase novel protein coding ENST00000420918 626 271 UTR5 Trans
TCONS_00098644 fatty acid 2-hydroxylase novel protein coding ENST00000420918 626 271 UTR3 Trans
TCONS_00098645 fatty acid 2-hydroxylase novel protein coding ENST00000420918 626 271 UTR3 Trans
TCONS_00098647 fatty acid 2-hydroxylase novel protein coding ENST00000420918 626 271 UTR3 Trans
TCONS_00147093 ATPase family, AAA domain containing 2B novel protein coding ENST00000420918 617 293 UTR3 Trans
TCONS_00170642 solute carrier family 6 (neurotransmitter transporter), member 6 novel protein coding ENST00000420918 517 299 UTR3 Trans
TCONS_00175015 copine IV novel protein coding ENST00000420918 563 307 UTR3 Trans
TCONS_00198039 hexosaminidase B (beta polypeptide) novel protein coding ENST00000420918 558 301 UTR3 Trans
TCONS_00213182 tubby like protein 4 novel protein coding ENST00000420918 604 306 UTR3 Trans
TCONS_00219453 WD repeat domain 27 novel protein coding ENST00000420918 584 309 UTR3 Trans
TCONS_00232466 tumor suppressor candidate 3 novel protein coding ENST00000420918 502 280 UTR3 Trans
TCONS_00232467 tumor suppressor candidate 3 novel protein coding ENST00000420918 502 280 UTR3 Trans
TCONS_00240685 metastasis suppressor 1 novel protein coding ENST00000420918 534 233 UTR3 Trans
TCONS_00240688 metastasis suppressor 1 novel protein coding ENST00000420918 611 305 UTR5 Trans

Sequence

>TCONS_00240688 (2531 nt)
AGACCTGAAGGCTGCTTCCGCTAACCCGGGCTGGCGCTGCTAACCTCACCCAACGATCCCTGCTGTCGGAAAATGTCCAGAGGCACCATCCCTGCTATGA
AGAGGGAATGCCAGTACAACAGCCACAAGGGGTCTTCCTGTGGCCCTCAAACAAAAAATCACTGCATTACATCAGCAGACTGCATTGGAGAGAAAGGCGC
CGGGACAGAAAAGCCTGAGATAAACCACCTGTCATTCTTGGAGAAAAGGATGCTGCGGCTTTCCCGATTTGGTTGATGAGATGGAAAATCAACCCTTACA
GGAAGGACATCACCAATTCCGGAAAGGATGCTGCGCCAGTCATGTTTCCGCACTCTGTGAGACGTTGAAATCTCCAGAAGTTGCCCAAGGTTTTCAAGCT
GAACACAGGAGAAATGACTCTGGATCTCTGAGGACTGTTTTCCTCAATAAGGAGCTGCAATCTTGGCTCCACCACCCTCCCTCCAAAACATCTCGTGTGT
CTGGTATCTGGTTATATTGTGGCCTGACAGAGAAGTTTCTTTCGGGGCCAGTGAATTAAAAAAAAAAAAAAAAAGAAAAGCGGGTCCTACCAACTCATTA
ATACTTTAATACTTTAAATTTCCCTCTTTATAGTAGGTTGAAATGTCAGTATCTCTTAAGAACAATGGCTGAACCAAATGTTTCCTCAAAACTCACATTT
TTTCCCACCATTTCAGAAGCTGCCTCAGGACTAAGCTTTGATTTTTTTTTTTTTTTTTAATCTGGCCCAAATTCCTATCTAAGGGGCCTGGGGAGTCATG
CCCAACAAACCATAAATTCTCATCAGATGAGTTTTATTTAACCCTATATATGGTGACTTGCTTTCCAGTCTGACTCTGGCATGACATGTGACAAAGAAGA
AAGTCAAAATATTTTACCCCAAAACATGTTTCTTTGCCATATTTTGAAATGGTCCTGCAAAGCTGTGCTTTGTGGGGGAAAATATGCATCTGTAAAGAAT
CTCTATTAACACAGCTAGATCTTTTTCTTCCAGGCCCTCCCAATCCTGAAGAGACTGAGAGTCTAGCATTGTTTTAAAGGTCTGAATAGGAAACATTTGT
CATCTATCATCTCTAAGGGTAGCCATTATAAGACTTCAAAAGAACCTTTTGAAGTATTATAATCTTTTATCTTAACCTGAACATGTGCTTCCTATTGATC
CCAGGTCTTCAGACAATTGTGAACTCAACCATTTGTCAATTAGAAAATGTTTAAATTGGCTGGGCACAGTGTCTCATGCCTCTAATCCCAGCACTTTGGA
AGACCAAGGCGGGCAGATTGCCTGACCTCAGGAGTTCGAGACCAGCCTGGGCAACATGGTGAAACCCCGTCTCTACTAAAATACAAAAATTTAGCCGGGC
GTAGTGGCATGCACCTGTAGTCCCAGCTACTTGGGAAGCTGAGGAAGGAGAATTGCTTGAACCCGGCGGGCAGAGGTTGCAGTAAGCAGAGATCGTGCCA
CTGCACTCCAGCTTGGGCAACAAAGTGAGACTCCATCACAGAAAAAAAAAAGAAAATGTTTACCTTTACCTATAGCCTGGAAATCCCTGCTTTGAGTTGC
TCCATCTTTCTGAACCAAACCAATGTTATTTCTTAAACGTATTTCATTGATGTCTCATGCCTCCCTAAAATGTATAAAACCAAGCTGTGCCCCGAACACC
TTGGGCACATGTTCTCAGGACCTCCTGAGGGCCGTGTCACGGGTCATAATCACTCATATTTGGCTCAGAATAAATCTCTTCAAACATTTTACAGAGTTGA
CTCTTAGTCAACATGTCCATACCTGATGAGATGCTTCATCAAAATTCTAGTGGACTGGCTAGTTCAGAAAATGGACCAGCCAGGTTTGCTTAAATGCACC
CCTGCACAACTATCTCACTCCTGCTTGGAGCCGGCTAGATCAGGAGACCTGTCCCTAAACTAATGTACTCCATGTCTTAAGTCTTTTTGTTTTGTTTTGT
TTTTGTTTTTGACAGAGTCTCAGTCTGTCACCCAGGCTGGAGTGCAGTGGCGTGATCTTGGCTCGCTGCAACCTCCGCCTCCCAGGTTCAAGAGATTCTC
CTGTCTCAGCCTCCCAAGTAGCTGGGACAACAGGTGTGCACCACCATGCCCTGCTAATTTTTGTGTTTTAAGTAGAGATGGGGTCTCACCCTGTTGGCCA
GGCTGGTCTCAAATTCCTGACCTCAGGTGATCCACCCACCTCGGCCTCCCAAAGTGCTGTAATTACAGGCATGAGCCACCGCACCCAGCCCATGTGTCTT
GGTCTTTTTTACTAATATTGATTATAAAATGGATGAAACTTTGGATAAAATTTCTGCGTTAGAATTTCTTTTTATATCTGTCCTAAAGCTTGTAACTACT
TGCTCATGATTTTTTGTGTATGTTTAGCAATGTGCATGTCATTGATGGCCTTTGTAAAGTATGTTCAATTGAGTTGTGGAGACAGAGGTGCAATTGGAGT
AGGTTGTAAGAATAAAAAGGAGTAGGCAAAAA

Expression



Full and truncated open reading frames discovered in TCONS_00240688

In silico ORF/peptide predictions
Nothing found.


RiboTaper predictions from Ribo-Seq data (HEK293 cell line)
Nothing found.

BLAST search results

No hits found.