Detailed information on ENST00000421685

lncRNA-RNA interactions

Number of interactions: 6

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
ENST00000498813 delta(4)-desaturase, sphingolipid 1 processed transcript ENST00000421685 612 304 noncoding Trans
ENST00000513143 podoplanin protein coding ENST00000421685 564 303 UTR5 Trans
TCONS_00065864 long intergenic non-protein coding RNA 412 novel protein coding ENST00000421685 614 298 UTR3 Trans
TCONS_00148450 coiled-coil domain containing 88A novel protein coding ENST00000421685 623 303 UTR3 Trans
TCONS_00204911 erythrocyte membrane protein band 4.1 like 4A novel noncoding ENST00000421685 627 304 noncoding Trans
TCONS_00204916 erythrocyte membrane protein band 4.1 like 4A novel protein coding ENST00000421685 627 304 UTR3 Trans

Sequence

>TCONS_00204916 (2077 nt)
GCAATGCGCACGCGCAGTGGCTTTGAAGGCGGGGCAACAAAGCCTGTGGCCGATGTGGCGCTCCTCGGCCCGCGCTTCAGTGGTTATGACAGTGTTCGCT
CTAAGGGGAGAAGGAATGTGTGACCATTTCCAACGGTTAACTTGCATTCCCCAGATAGTTTGGATGAGTTACAACCTAAATCTGCAAACTCAATACAGCC
AGACCCTGGGAAGTGACTCTCTCCAAGCCTCCTGTACAAGTCCCAGGAAAAGAGCCTGTTTTCCCTTGGACATGTGAGCAGTGAATTACTGCTCATTCAG
AATTTCATGTGTATGTGTTACTGATGGCCAGGTTTAGAGATACCAACCTATTTATTTCTAGAGGAGAGGTGATTTGATAACCTTTTCAGATATCACTATC
AGTAGGCAGAAAAGGGTTAATAGTATGATAGGGTTAATATGTCCTGAGGAGAGTAAAGAAATTGCAAACTGCAGAAGCACCTGATCTGTGGCCCTGGCCA
GCATCTCTCCATATCCTGATTCTGTAAGATCAAGTGTTTATGCAGAAAGAGAAGGGACTGATGATTTGAATGTGACCAGATGCAGGGCATGCCCTTATTG
CCATGCCAGCATTTGCTATTCATGATGTTAGTATTCAAAAATCAAGAAACACCCTTCCTGGGCCATTGGTGTCTACTAATCCATTGGAAGAAAAGACTGG
AATCCACCACTTACTAGCTTCTTGGGCCTCAGTCCCCTCTTTTCTGCCATAGCTAAGGACCACCTAACCTAGATGGCTGTTGTTATTGTTCAAAGGGACA
TCTTTAGAGCCTCAAGCCCAGGAATAGCCCGTGGCAGGCACCTGGTAAATGTTAGTTTTCATTGTCCTATCCCAACACTATGAAACATGCAGCACTCTCT
GCAACTGCCCCTGTGGATTTCCATAGGCAGGAGAGTATCCAGTGTTGAGTGGAGCTGGTATTCTCAGAAACGAAGCCCCTTTCCTCATTTTGCGCCAATC
TCTTCAGTCATTTTTACCCTAGTAGTATAATGCTTTGTCAAAGTCACTGTCATCTGATGTTAACAGTTGTTTTCGCCAGATGACTTTTCAAAAGGTAACT
TCACCATAATACCGGTTAATGTGATAAAAACACTGCATGTAGCCAATTTTTTTTTTTTTTGAGATGGAGTTATTGGCTCTTGTTGCCCAGGCTAGAGTGC
AGCGGCGTGATCTTGGCTCACTGCAACCTCCATCTCGTGGGTTCAGGTAATTCTCCTGCCTCAGCCTCCCGAGTGGCTGGGATTACAGGCACACGCCACC
ATGCCCAGCTAATTTTTTTGTATTTTTAGTAGAGTCGGGGTTTCACTATATGTTGGCCAGGCTGGTCTCGAACTCCTGACCTCAGGTGATCCGCCTGCCT
CAGCCTTCCAAAGTGCTGGGGTTACAGGTGTGAGCCACTGCACCCAGCCAAATATTTTCTTATTTATTTATTTATTTTAGAGACAGGATGCCATTATGTT
GCCTAGTTTGGAATGCAGTGTCTATTTAGAGGCGTGATCATGGCATACTATAGCCTCGGCTCAAAGGACCCTGGTCTCAAAGGACCCTGCCACCTTAGCC
TCCTGAGTAGCTGGGACAAGTGTGCGCCACCACACCTGGCTAATTTTTTAAATTTTTTGTAGAGATAGTGTCTCGCTATGTTGCCCACGCTGGTCTGGAA
TTCCTGGACTCAAGGCCTCTTCCTGCCCTCAGACTTCCAAAGTGTTAGGATTACAGGGTGAGTCACCACGCCCAGCCAGTGTGAATTTTCTAATGCTGAG
TAAGTTGTGATCCAGAAGTAAATGTATCTGCAAGCTGATTTAAATTGTAGATTTTCTCTTCATTGCATATTTTCTGATGTTGAATAAAGTCTGAGTATTA
ACTAAAGTTTTTGCTTCTTAAATATGTAAGAATTGTCCTCAAAATCTCTATTCTTGAGCACAGTAGTAAAAATATTTTTACATACATTGTATTTCAAGGG
TTCTGCATAAGCAACCTTGTTTTATTGTGACAATTTATTTGGGAATTGTATCAAATATATAATACTGAGATGTTCTCA

Expression



Full and truncated open reading frames discovered in TCONS_00204916

In silico ORF/peptide predictions
Nothing found.


RiboTaper predictions from Ribo-Seq data (HEK293 cell line)
Nothing found.

BLAST search results

No hits found.