Detailed information on ENST00000421685

lncRNA-RNA interactions

Number of interactions: 6

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
ENST00000498813 delta(4)-desaturase, sphingolipid 1 processed transcript ENST00000421685 612 304 noncoding Trans
ENST00000513143 podoplanin protein coding ENST00000421685 564 303 UTR5 Trans
TCONS_00065864 long intergenic non-protein coding RNA 4... novel protein coding ENST00000421685 614 298 UTR3 Trans
TCONS_00148450 coiled-coil domain containing 88A novel protein coding ENST00000421685 623 303 UTR3 Trans
TCONS_00204911 erythrocyte membrane protein band 4.1 li... novel noncoding ENST00000421685 627 304 noncoding Trans
TCONS_00204916 erythrocyte membrane protein band 4.1 li... novel protein coding ENST00000421685 627 304 UTR3 Trans

Sequence

>ENST00000421685 (2078 nt)
GCAATGCGCACGCGCAGTGGCTTTGAAGGCGGGGCAACAAAGCCTGTGGCCGATGTGGCGCTCCTCGGCCCGCGCTTCAGTGGTTATGACAGTGTTCGCT<br />CTAAGGGGAGAAGGAATGTGTGACCATTTCCAACGGTTAACTTGCATTCCCCAGATAGTTTGGATGAGTTACAACCTAAATCTGCAAACTCAATACAGCC<br />AGACCCTGGGAAGTGACTCTCTCCAAGCCTCCTGTACAAGTCCCAGGAAAAGAGCCTGTTTTCCCTTGGACATGTGAGCAGTGAATTACTGCTCATTCAG<br />AATTTCATGTGTATGTGTTACTGATGGCCAGGTTTAGAGATACCAACCTATTTATTTCTAGAGGAGAGGTGATTTGATAACCTTTTCAGATATCACTATC<br />AGTAGGCAGAAAAGGGTTAATAGTATGATAGGGTTAATATGTCCTGAGGAGAGTAAAGAAATTGCAAACTGCAGAAGCACCTGATCTGTGGCCCTGGCCA<br />GCATCTCTCCATATCCTGATTCTGTAAGATCAAGTGTTTATGCAGAAAGAGAAGGGACTGATGATTTGAATGTGACCAGATGCAGGGCATGCCCTTATTG<br />CCATGCCAGCATTTGCTATTCATGATGTTAGTATTCAAAAATCAAGAAACACCCTTCCTGGGCCATTGGTGTCTACTAATCCATTGGAAGAAAAGACTGG<br />AATCCACCACTTACTAGCTTCTTGGGCCTCAGTCCCCTCTTTTCTGCCATAGCTAAGGACCACCTAACCTAGATGGCTGTTGTTATTGTTCAAAGGGACA<br />TCTTTAGAGCCTCAAGCCCAGGAATAGCCCGTGGCAGGCACCTGGTAAATGTTAGTTTTCATTGTCCTATCCCAACACTATGAAACATGCAGCACTCTCT<br />GCAACTGCCCCTGTGGATTTCCATAGGCAGGAGAGTATCCAGTGTTGAGTGGAGCTGGTATTCTCAGAAACGAAGCCCCTTTCCTCATTTTGCGCCAATC<br />TCTTCAGTCATTTTTACCCTAGTAGTATAATGCTTTGTCAAAGTCACTGTCATCTGATGTTAACAGTTGTTTTCGCCAGATGACTTTTCAAAAGGTAACT<br />TCACCATAATACCGGTTAATGTGATAAAAACACTGCATGTAGCCAATTTTTTTTTTTTTTGAGATGGAGTTATTGGCTCTTGTTGCCCAGGCTAGAGTGC<br />AGCGGCGTGATCTTGGCTCACTGCAACCTCCATCTCGTGGGTTCAGGTAATTCTCCTGCCTCAGCCTCCCGAGTGGCTGGGATTACAGGCACACGCCACC<br />ATGCCCAGCTAATTTTTTTGTATTTTTAGTAGAGTCGGGGTTTCACTATATGTTGGCCAGGCTGGTCTCGAACTCCTGACCTCAGGTGATCCGCCTGCCT<br />CAGCCTTCCAAAGTGCTGGGGTTACAGGTGTGAGCCACTGCACCCAGCCAAATATTTTCTTATTTATTTATTTATTTTAGAGACAGGATGCCATTATGTT<br />GCCTAGTTTGGAATGCAGTGTCTATTTAGAGGCGTGATCATGGCATACTATAGCCTCGGCTCAAAGGACCCTGGTCTCAAAGGACCCTGCCACCTTAGCC<br />TCCTGAGTAGCTGGGACAAGTGTGCGCCACCACACCTGGCTAATTTTTTAAATTTTTTGTAGAGATAGTGTCTCGCTATGTTGCCCACGCTGGTCTGGAA<br />TTCCTGGACTCAAGGCCTCTTCCTGCCCTCAGACTTCCAAAGTGTTAGGATTACAGGGTGAGTCACCACGCCCAGCCAGTGTGAATTTTCTAATGCTGAG<br />TAAGTTGTGATCCAGAAGTAAATGTATCTGCAAGCTGATTTAAATTGTAGATTTTCTCTTCATTGCATATTTTCTGATGTTGAATAAAGTCTGAGTATTA<br />ACTAAAGTTTTTGCTTCTTAAATATGTAAGAATTGTCCTCAAAATCTCTATTCTTGAGCACAGTAGTAAAAATATTTTTACATACATTGTATTTCAAGGG<br />TTCTGCATAAGCAACCTTGTTTTATTGTGACAATTTATTTGGGAATTGTATCAAATATATAATACTGAGATGTTCTCA

Expression



Full and truncated open reading frames discovered in ENST00000421685

In silico ORF/peptide predictions
>peptide 1 (91 aa)
QCARAVALKAGQQSLWPMWRSSARASVVMTVFALRGEGMCDHFQRLTCIPQIVWMSYNLNLQTQYSQTLGSDSLQASCTSPRKRACFPLDM


RiboTaper predictions from Ribo-Seq data (HEK293 cell line)
peptide No. 1: MTVFALRGEGMCDHFQRLTCIPQIVWMSYNLNLQTQYSQTLGSDSLQASCTSPRKRACFPLDM

BLAST search results

Best hit to NONCODE v4:
NONHSAT136839 (Evalue: 0)

Best hit to Swiss-Prot:
sp|Q8WTZ3|YS049_HUMAN (Evalue: 7.0E-18)