Detailed information on ENST00000421951

lncRNA-RNA interactions

Number of interactions: 5

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
TCONS_00148698 WD repeat containing planar cell polarit... novel noncoding ENST00000421951 1505 934 noncoding Trans
TCONS_00148698 WD repeat containing planar cell polarit... novel noncoding ENST00000421951 863 548 noncoding Trans
TCONS_00156217 antisense novel protein coding ENST00000421951 615 378 UTR5 Trans
TCONS_00156217 antisense novel protein coding ENST00000421951 1743 1060 UTR5 Trans
TCONS_00188222 cyclin G2 novel noncoding ENST00000421951 605 381 noncoding Trans

Sequence

>ENST00000421951 (1899 nt)
AAGGTGCGCGTGCTCGCTGGTCCTAACGGTTCTGTTGGGCGTTTCTGCTGAGAGGCGGGAGGGGCTGAGAGTCTGTGCGAAGGTAGGTGGACAGACTGCA<br />TTGCTTGTTGTTGCGCTTCGGAGGCGGCGATCCCCGAAGGCGAGCTGAAATACGGCTGGAGCGTTCCCAGGCTACAGTTTGTAGCCGACGATTGTGGAAG<br />ACTAGGAGCCGGAGAGGTGGCCCACCCTCAGGGAGCGCTTGTGCTCGGAGGGCTTCTCATTTCCCCAATACCACATTAAATCGTCTCATCTGAGGAGGAT<br />CCACAGAGCTGTCTTCTATGGTAATCTGGAGAAACTGGAGTACCTTCTGCTCACGTATCATGACACCAATGAGAGAGACAAGGAGGAAAGCATCCGGTGA<br />AAGACAGAGATCACATTTCAACTAGATTCTTAGGAAGTATGGATTCACTAACTTCAGCGAAGCTTACCCTGAAAGAAGCAGATCCCAGTTCAAAAGTAGC<br />CATAAGAAGGAAGGATTCACCACCTCCAGGAAAAGGTTGCCTGTTCACTCTGATCGTAGTATTGGAAGTTCTGGCCAAGGCAATCAGACAAGAGGAAAAA<br />ATAAAGGGTATTCAAATAGGAAGAAAGGAAGTCAAATTGTCTCTGCAGATGACATGATTGTATATTTAGGAAACCAAATCGTCTCAGCCCCAAATCTCCT<br />TCAGCTGATAAGCAACATCAGCAAAGTCTCAGGATACAAAATCAGTGTGCAAAAATCACAAGCATTCCTATACACCAATAAAAGACAAACAGCCAAATCA<br />TGAGTGAATGCCCATTCACAATTGCTGCAAAGAGAATAAAATACCTAGGAATACGACTCACAAAGGATGGGAAAGACCTCTTCAAGGAGAACGACAAACC<br />ACTGCTCAAGGATATAAGAGAGGACACAAACAAATGGAAAAACATTCCATGCTCATGGACAGGAAGAATCAATATCACGAAAATGGCCATACTGCCCAAA<br />GTAATTTATAGGTTCAGTGCTATAGACTACCATTGACTTTCTTCACAGAATTAGAAAGAACTACTGGAAATTTCATATGCAACCAAAAAAGAGCCCATAT<br />AGCCAAGACAATCCTAAGCAAAAAGAACAGAGCTGGAGGCATCACGCTACCTGACTTCAAACTATACTACAAGGCTATAGTAATGAAAACAGCATGGTAC<br />GGGTACCAAAACAGGGATATAGACCAATGGAACAGAACAGAGGCCTCAGAAGTAACACCATACATCTACAACCATATGATCTTTGACAAACCTGACAAAA<br />AACAATCAATGGGGATAAGATTACCTATTTACTAAATGGTGTTGGGAAAACTGGCTAGCCTTATGCGGGAAACTGAAACTGGACCCTTTCCTTACACCTT<br />ATACAAAAATTAACTCAAGATAAATTAAAGACTTAAACGTTTAAGTAAGACCTAAAACCATAATAACCCTAGAAGAAAACCTAGGCAATACCATTCAGGA<br />CATTGGCATGGGCAAAGACTTCAAGACTAAAACACCAAAAGCAATGGCAACAAAAGCCAGAATTGACAAATGGGATCTAATTAAACTAAGGAACTTGTGC<br />AGTTTTATTTGGGAGTGTGCATGAGGTACCTCTGAGTTTTAAAAATGAAGAAAGTAAGTGGTCATGCTTTCCTGACTCTTTGGTAGACACAGCCTTTTAA<br />GACGGTGATTCTGAGCTGTTATGGTTTTGGGTTTTCTATAATACTAAAGCTTACTGCCGACATGTAACCAAAAGCTTGAATTAATGAAAAAAAAATTACC<br />CAAATGCACGTTAAAAACCTCTTACAACATATGTGCACATTCATAGATAACATGTAGAACTTTATTTTGTGTTAAAAAGCTTGTAGAAAAGTTCAGGCA

Expression



Full and truncated open reading frames discovered in ENST00000421951

In silico ORF/peptide predictions
>peptide 1 (78 aa)
MSECPFTIAAKRIKYLGIRLTKDGKDLFKENDKPLLKDIREDTNKWKNIPCSWTGRINITKMAILPKVIYRFSAIDYH

>peptide 2 (72 aa)
MDSLTSAKLTLKEADPSSKVAIRRKDSPPPGKGCLFTLIVVLEVLAKAIRQEEKIKGIQIGRKEVKLSLQMT

>peptide 3 (67 aa)
MPIHNCCKENKIPRNTTHKGWERPLQGERQTTAQGYKRGHKQMEKHSMLMDRKNQYHENGHTAQSNL

>peptide 4 (50 aa)
MKTAWYGYQNRDIDQWNRTEASEVTPYIYNHMIFDKPDKKQSMGIRLPIY


RiboTaper predictions from Ribo-Seq data (HEK293 cell line)
Nothing found.

BLAST search results

Best hit to NONCODE v4:
NONHSAT072207 (Evalue: 0)

Best hit to Swiss-Prot:
sp|O00370|LORF2_HUMAN (Evalue: 8.0E-100)