Detailed information on ENST00000421951

lncRNA-RNA interactions

Number of interactions: 5

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
TCONS_00148698 WD repeat containing planar cell polarity effector novel noncoding ENST00000421951 1505 934 noncoding Trans
TCONS_00148698 WD repeat containing planar cell polarity effector novel noncoding ENST00000421951 863 548 noncoding Trans
TCONS_00156217 antisense novel protein coding ENST00000421951 615 378 UTR5 Trans
TCONS_00156217 antisense novel protein coding ENST00000421951 1743 1060 UTR5 Trans
TCONS_00188222 cyclin G2 novel noncoding ENST00000421951 605 381 noncoding Trans

Sequence

>TCONS_00188222 (1898 nt)
AAGGTGCGCGTGCTCGCTGGTCCTAACGGTTCTGTTGGGCGTTTCTGCTGAGAGGCGGGAGGGGCTGAGAGTCTGTGCGAAGGTAGGTGGACAGACTGCA
TTGCTTGTTGTTGCGCTTCGGAGGCGGCGATCCCCGAAGGCGAGCTGAAATACGGCTGGAGCGTTCCCAGGCTACAGTTTGTAGCCGACGATTGTGGAAG
ACTAGGAGCCGGAGAGGTGGCCCACCCTCAGGGAGCGCTTGTGCTCGGAGGGCTTCTCATTTCCCCAATACCACATTAAATCGTCTCATCTGAGGAGGAT
CCACAGAGCTGTCTTCTATGGTAATCTGGAGAAACTGGAGTACCTTCTGCTCACGTATCATGACACCAATGAGAGAGACAAGGAGGAAAGCATCCGGTGA
AAGACAGAGATCACATTTCAACTAGATTCTTAGGAAGTATGGATTCACTAACTTCAGCGAAGCTTACCCTGAAAGAAGCAGATCCCAGTTCAAAAGTAGC
CATAAGAAGGAAGGATTCACCACCTCCAGGAAAAGGTTGCCTGTTCACTCTGATCGTAGTATTGGAAGTTCTGGCCAAGGCAATCAGACAAGAGGAAAAA
ATAAAGGGTATTCAAATAGGAAGAAAGGAAGTCAAATTGTCTCTGCAGATGACATGATTGTATATTTAGGAAACCAAATCGTCTCAGCCCCAAATCTCCT
TCAGCTGATAAGCAACATCAGCAAAGTCTCAGGATACAAAATCAGTGTGCAAAAATCACAAGCATTCCTATACACCAATAAAAGACAAACAGCCAAATCA
TGAGTGAATGCCCATTCACAATTGCTGCAAAGAGAATAAAATACCTAGGAATACGACTCACAAAGGATGGGAAAGACCTCTTCAAGGAGAACGACAAACC
ACTGCTCAAGGATATAAGAGAGGACACAAACAAATGGAAAAACATTCCATGCTCATGGACAGGAAGAATCAATATCACGAAAATGGCCATACTGCCCAAA
GTAATTTATAGGTTCAGTGCTATAGACTACCATTGACTTTCTTCACAGAATTAGAAAGAACTACTGGAAATTTCATATGCAACCAAAAAAGAGCCCATAT
AGCCAAGACAATCCTAAGCAAAAAGAACAGAGCTGGAGGCATCACGCTACCTGACTTCAAACTATACTACAAGGCTATAGTAATGAAAACAGCATGGTAC
GGGTACCAAAACAGGGATATAGACCAATGGAACAGAACAGAGGCCTCAGAAGTAACACCATACATCTACAACCATATGATCTTTGACAAACCTGACAAAA
AACAATCAATGGGGATAAGATTACCTATTTACTAAATGGTGTTGGGAAAACTGGCTAGCCTTATGCGGGAAACTGAAACTGGACCCTTTCCTTACACCTT
ATACAAAAATTAACTCAAGATAAATTAAAGACTTAAACGTTTAAGTAAGACCTAAAACCATAATAACCCTAGAAGAAAACCTAGGCAATACCATTCAGGA
CATTGGCATGGGCAAAGACTTCAAGACTAAAACACCAAAAGCAATGGCAACAAAAGCCAGAATTGACAAATGGGATCTAATTAAACTAAGGAACTTGTGC
AGTTTTATTTGGGAGTGTGCATGAGGTACCTCTGAGTTTTAAAAATGAAGAAAGTAAGTGGTCATGCTTTCCTGACTCTTTGGTAGACACAGCCTTTTAA
GACGGTGATTCTGAGCTGTTATGGTTTTGGGTTTTCTATAATACTAAAGCTTACTGCCGACATGTAACCAAAAGCTTGAATTAATGAAAAAAAAATTACC
CAAATGCACGTTAAAAACCTCTTACAACATATGTGCACATTCATAGATAACATGTAGAACTTTATTTTGTGTTAAAAAGCTTGTAGAAAAGTTCAGGCA

Expression



Full and truncated open reading frames discovered in TCONS_00188222

In silico ORF/peptide predictions
Nothing found.


RiboTaper predictions from Ribo-Seq data (HEK293 cell line)
Nothing found.

BLAST search results

Best hit to NONCODE v4:
NONHSAT114548 (Evalue: 3e-105)

Best hit to Swiss-Prot:
sp|O00370|LORF2_HUMAN (Evalue: 1e-35)