Detailed information on ENST00000422488

lncRNA-RNA interactions

Number of interactions: 2

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
ENST00000393735 solute carrier family 26 (anion exchange... protein coding ENST00000422488 1046 304 UTR5 Cis
TCONS_00230128 solute carrier family 26 (anion exchange... novel protein coding ENST00000422488 2262 672 UTR5 Cis

Sequence

>ENST00000422488 (2725 nt)
GAGGCTTTCTTCACAGCTAGCTGATCGGATCCTTGCAGCTGTTTCTTCTGTAGGTCTCGGAGCTCACTGAGAACGTCCAGCACGCCTTCCCGGCGGGGCC<br />CGGCCCAGGTGCGCACTAGATGAGGCAGTCAACCAAGTCAATTGGTTCCCGATCAACTAAATCTCTCCTAAAAATAAACACTGCCGCGAGCTTCGAGAGT<br />TCAGCGTGTCAGAGCCTCTATGATGGCAGAGCACCTGCCGCGATGCCTGATTGGTAGGGAGAAGGATTTCCCGGGAGGGGGCCAATACCAAATTTTAGGG<br />CTGTTAGGCTCTGAGCAGTCCCTTCGTGACCGGATAAGTCAGAGACCCGGGGTTTGAGCCTTGCCCGGCGCTGAGCGGAGGGCCCAGTTTCGGGACCACA<br />GCCTTGCTCCCTGGGAGCTCCGGGCGGCCAATGCCGGGCAAGCCCAGCCCGGCACAGGAGGAGGCAGGGCCCGTCTCCGGAAAGAGGGCCAGAGGCAGAA<br />CTGAGGGCCTGGTTTTGTGTAATTCGATTTGGATACAAACAGGCCAGACCCAAACTGGAAACGGCGAAGGGCTGGATTAGCACCGAAGGGATTCGAGGAG<br />GCAAACGGGAAGTAAAAATGCTGTGTGGAGCTGCAGAGGGCAAGGGGACAGGGGTTGCAAAGGAAAGAGCTTCGTGAGACTTTCTCCTTCCCGGCGTAGG<br />GACCAGCAGAGTGCGGGCAGGTCAGCCCTGTCACCGGTTCGTTTAGGGAAAAAGCGCGACATGGGGCCTGGGAGACAGGGGCAGAGGCGGTGACAGCGAG<br />GGCCCCTGCTCGGGTGGGCCCGCGGGCCTCAGCTCAGTCCCCTCCCGAGGGACCGCGACCCCCGGCCCCGCGGCCGCCCGCGCGCACTCACCAGCCCGGG<br />CTGCCCTGGGCGGAGCCGCCCCGCCGCGCTCCACAGCCGCTGCCTCTTCGACGCGCGCGCTGCCTCCAGGTGCGGCTCTAGGAGGAGGCGCCGCGGGCAG<br />TGCCGGCCGCGCCCCGCGACTCCCGGTAACCCGAGCCCGCCCCGCCCCGCTAGGGCCAGGCCCCGCCGCCACCCTCCGCGCTGGGACGCCGGGGCGCGGG<br />CATCCCTGCCGCCTACGGATCTCTTCCCAAGCACCTAGAACTTTCCAAAGCGTGCTTGGAATTTAACACCTTGGTCGTCGATCCCCGCAAATATACTCTG<br />ATGAGACCGGCTTTCTTCCCATACCGCCCAGGAGTTTCTCCAGGTGGCATTCCTGTCGCCTTGAGGTGGAACATCAGTAGAGGCTCGAGGCTGAAGCAAG<br />CACAATACACAAGAGACTCCGATTCGTACAGGAACATTTCGAAAACAGGAAATCCTGAGGACAATTATTTCATCCTGAGCAGGAACACATTTACTCTTAT<br />AAAAGTTTCAGCTTGAGAGACAGCTGGCAAGATGGCTGAATAGGAACAGCTCCAGTCTGCAGCTCCCAGCAAGATCAATGCAGAAGGTCCAATTCTTTTC<br />TAAAAGTCTTCTGGCTAGTCCCAGCATTTCCAGGGAAGCTGAACAGGTGCAGCCGGAGGCTTGGAGCCACTATGGAAGCAGCACAGTTGATGCCTCAGAG<br />GATCCAGAGAAAAGACCAGATAACTATAATTCAGCCTTCACCCATATTGTGTCTTTTTGATTTTGTCTGAGTATATATGCCGCACAACAAGCAGCTTATC<br />TCTGAGATTCAAATAGTTACTGCAATTCCATTATCTGTTTTTTTACTGTGAGGGATTTGGAGCCACATTTAGTCCTACATCACAGATACAGGACTCAAGA<br />GTCAAAGTGCACAGAAATTTGAATTCCGATAAGAATACTCTGAGCCAGTTTATTCTGGGGTACATACTTCATTTTATGCTAGAACTCTGCAATCCTGATG<br />AAAGAGGGCTTGCATTGCTCAACTAACTAACTCACCCGTCTCTCCTGCAGTATTAGAAACTACTTCTGTATGTACACGTTACAGTTTCTAGGAACTCCAT<br />TTTTGCAAGACAGATAGGAGCCAGAAAATTTGTTCCTTCAACTGTATATCGCTAATTAAACATAAAATCAAATCAGCATTTTAGGTACTTGAATAACTAG<br />TCTGTGCTTACTTTTATTCATATGGAAGCAGTGTTTAAATTATTCTCTGATTGTAAACTCACTTATGTAAACCATTATACAGGAAAAAAATGAGTAATGA<br />AGCAAAGTTCTGAAGCAGATCTATGTAAGCAAATTTCAATAACCTTCTTAAGAGAATATGACACTTAGTAGTGGTGAGGGACATTTTAAGCTTTTTCTAT<br />TTACAAGTTTTTTTTAAACGAGGGTGTTTCAAAGTAAATATTTGCTGTTACGTTATGCCACATGATATACTAATAAATGAATTAATGAAATTAACCTAAA<br />TATCCAGTATTATTATTGAATATATAGCTACTAAAATTTTATATTCAAATATATCCAAGGACATGAGGAAATAAGGATTTAATTCTAAACAAAAAAAGAA<br />GCTATGAAATATATATAATTTAAGACTATAATTTTGTTAAAAATATGTTTATGTAAATGCGCTAAAAAAAGTTCTTTAAGAATATATGCCAAAATATTGA<br />CAATGGTTATCCCCTGAGTGATTTTTATTTTCATCCTTAGGATTTTCTGTATTTTCTGTTTCACATTTTGAACATGTATACTTTTACAAGAAAATATGAA<br />CTAAAATTAAAAATTTTTAAACTCC

Expression



Full and truncated open reading frames discovered in ENST00000422488

In silico ORF/peptide predictions
>peptide 1 (71 aa)
MRPAFFPYRPGVSPGGIPVALRWNISRGSRLKQAQYTRDSDSYRNISKTGNPEDNYFILSRNTFTLIKVSA

>peptide 2 (60 aa)
MQKVQFFSKSLLASPSISREAEQVQPEAWSHYGSSTVDASEDPEKRPDNYNSAFTHIVSF


RiboTaper predictions from Ribo-Seq data (HEK293 cell line)
Nothing found.

BLAST search results

Best hit to NONCODE v4:
NONHSAT122556 (Evalue: 0)