Detailed information on ENST00000423121

lncRNA-RNA interactions

Number of interactions: 4

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
ENST00000309060 zinc fingers and homeoboxes 3 protein coding ENST00000423121 585 299 UTR3 Trans
ENST00000421422 zinc fingers and homeoboxes 3 protein coding ENST00000423121 585 299 UTR3 Trans
TCONS_00030591 cytoplasmic polyadenylation element binding protein 3 novel protein coding ENST00000423121 611 392 UTR3 Trans
TCONS_00124891 zinc finger protein 540 novel protein coding ENST00000423121 664 406 UTR5 Trans

Sequence

>TCONS_00124891 (2149 nt)
GAACGGTGTGGCCACGAGAGTCTAGAGGAAACCAACCCGCAACTCACTGGAGCTGAAGGGCTGGTAGTCAGGCCGAATCTCGCGAGAATTGGAACTATTT
CAGAGCCAGAGGAGGATAGTGGCGGCGGCGAACTTTGCCCGGTAGATTTTACTGACTGGGGTGCTGGCGCGCGCCTTTTTCTCGGCCAGAATCCAGTTAT
TGGGATAGTCTTGACTTCTACCTCAGCCCAACTTCTGTGGTCGTAATATTAGTTTAGCTTGGGTTTGCCGTGAAGTAAGAAGACTGACTTCCGCAAAGGT
ACTGAACGACTGGGTGTAGGTGCCAGGGCATGGACGTGAAGCTGGAACCGCGAAATGAGTTAGTTGTGGGCCGCTGGCCTCAAGGAGCGAACGTCAGCGC
GAAGAGGAGAAGCTTGTGCATACGCTCTGATAAGGGTTTTAATAGAGAGATGGAATCTCGCTGTGTCACCCAGGCTGGAATGCAGTGACTCGATCATAAC
TCACTATGACCTCGAACTCCCAGGCTAAAGCAGTCCTCAAGCAATCCTTCCACCTCAGCCTTCTGAGTAGCTGGGAGTAGCTGATTAACTAATGCGTGTC
ACCACGCCCAGCTAATTTGTGTATGTGTGTGCACAGGTGTAGAGCTAGGGGTCTTGCTATGTTGCTCAGGCTAGTCTTGAACTCCTGGCCTCAAGCAGTC
TTGTCTTGACCTCTCAAACCAGTGGGACTGTAGGTGTGAGCCATTGCTCCTGGCTGAGCACTGTTTTTTTTAGGACAGACTGTATTCATTGTTGCAATCT
TCAGCTTTTGGAACATCGTCTAGGACAGAGAAGCTGCACAATATGTATTTATCGAATGAGTGAATGATACTTTTGGGAGAGAAGACAGTGGGTTGGAGAA
ATATCTTGGAAGAATTGGAAATTTTAGGTGGACCTTGAAGAAAGGGTAAAATTCAATTAGGACACAAGCAGTGATCAAAAGCATTGAGTTGGGAACAAAG
TGGTAGGATGTGGGAGTTAGTATATAGTAAAAACAACTAAAATATAGAAAGAGATTATGTGTTTAATAGAAATAGGATTGACTAAAGTGAATCCACGTTG
TATCTGTAAGAGGTCCATCGTTGAACTTTATTTTTTTTTGTTTTGTTTTTGAGACAGGGTCTCACTCTGTTATCTAGGCTGGAGTGCGGTGGCACAATCT
CAGCTCACTGCAGCCTCAGCCTCCCAGGTTCAAGTGATTCTCCTGCTTCAGCCTCCCATATAGGGATTACAGGCCTGCACCACCACACCTGGCTAATTTT
TGTATTTTTAGTACAGACGGGATTTCACCATGTTGGCCAGGCTGGTCTCGAACTCCTGACTTCAAGTGATCCACCCGCCTCGGCCTTCCAGAGTGCTGGG
ATTACAGGCCTGAGCCACTGCACCCAGCCACCTGTATTTATTTTTGAGACAGGGTCTTGTTCTGTCGCCTTGGCTGGAGTGCAGTGGTGCAATCATGGCT
CACTGCAGCCTTGACTTCCCAGGCTCAATGAATAGCTGGGACTACAGGTGTGCACCACCATACCCGGCTAATTTTTGTATTTTTTGTAGAGATGGTGTTT
CGCCATCTTGCCCAAGCTGGTCTCAAACTCCTGGCCTCAAGTGATCCACCCGTCTAGGCCTCCTACAGTGCTGGGATTACAGGGTTGAGCCACCACACCC
AGCCTCATGGTTGAATTTTAGGAGAGCCGTACATCTCCTCCTGATAATACATGCAAAACTTCATGTGTCCATTTTTTTCTGAGTTGAAGTTTCATAGTTT
TCATCCAATTCTCAAAGGTGTTTATAAACCAATAAAGGTTAAGAATCATGTTGTGCATTTGAAAGACTAATAGAAAGGCTTAAGCTTAATGCTGTAGCAA
ATTAGTCTTCAAAAGTTTTCTACCATAGCATTCATTAGGAACAGAAGAGGGGGAATGAGACCCTAAGATTTAGAGATGAAGTCTGAAACTTAGGACTTTA
TATTTATCTGAACATCATATGTAAATTTTACTATTATGGGACTGGTATTAATGCTTCCTTATAAAAATATATTTAGCCTCATCAGTGATCAGGGAACCAT
ATTTGGGACCAGTCTGTTCAGTTGGCAAAAATTAAAAAGGCCATCATATC

Expression



Full and truncated open reading frames discovered in TCONS_00124891

In silico ORF/peptide predictions
Nothing found.


RiboTaper predictions from Ribo-Seq data (HEK293 cell line)
Nothing found.

BLAST search results

No hits found.