Detailed information on ENST00000423984

lncRNA-RNA interactions

Number of interactions: 3

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
ENST00000358776 acyl-CoA dehydrogenase, short/branched c... protein coding ENST00000423984 774 389 UTR3 Trans
ENST00000428597 CDKN2B antisense RNA 1 antisense ENST00000423984 818 479 noncoding Trans
TCONS_00116334 low density lipoprotein receptor class A... novel protein coding ENST00000423984 1676 858 UTR3 Trans

Sequence

>ENST00000423984 (2060 nt)
GATACGCAAAAAGCTACCACTATGTCTCCACGAAGCTGAGTATTTTCCTTGGAGTAGCTTTTTATTTGGACATATGGAATGAAACTTACTTAATATTCTG<br />CAGAGATCTTCCTGGTGTTTCCAAAATGTCTCAGGTATGTCTTTATCAGCATCATGAAAACAGACTAATACAGTAAGTTGATACCAGTACAGTGGGGCAT<br />TGCCGAAAAGATACCTGAAAATGTGGAAGTGACTTTGGAACTGGGTAACAGGCAGAGATTGGAACAGTTTGGAGGGCTCAGAAGAAGATAGGAAGATAAG<br />GGAGAGTTTGAAACTTCCTAGAGACTTGTTGAATGGCTTTGCTCAAAATGCTGATAGTGATATGGACAATAATGTACAGACTGAGGTGGTCTCAGATGGA<br />GATGAGGAACTTGTTGGGACCTGGAGCAAAGGTGACTTGTTATGTTTTAGCAAAGAGACTGGCAGCATTTTGCCCCTGCCCTAGAGATTTGTGGAACTTT<br />GAACTTGAGAAAGATGATTTAGGGTATCTGGCAGAAGAAATTTCTAAGCAGCAAAGCATTCAAAAGGTGACTTAGATACTGTTAAAGGCATTCAGTTTTA<br />TAAGGGAAGCAGAGCTAAAAGTTTGGAAAATTTGCAGCCTGACTATGCAAAACCAATTTTCTGGGGAGAAAAGAGAAACCAATTTTCTGGGGAGAAATTC<br />AAGCCCGCTGCAGAAATTTGCATAAGTAGCAAGGAGCCTAATGTTAATCCTCAAGACCATGGGGAAAATGTCTCCAGGCCATGTCAGAGACCTTCACAGC<br />AGCCCCTCCCATCACAGGTCCAGAGGCCCAGGAGGAAAAAGTGGTTTTGTGGGCCAGGCTCAGGGTACTGGTGCTGTGTGCAGCCTAGGGACTTGGCGCA<br />CTGTGTCCTAGCCACTCCAGCTGTGGCTGAAAGGGGCCAAGACAGAGCTCGGGCAGTGGCTTTAGAGGGTGGAAGCCCCAAGCCTTGGCAGCTTCCATGT<br />GGTGTTGAGCCTGCAGGTGCACAGAAGTCAAGAACTGAGGTTTGGGAACCTCCGCCTAGATTTCAGAAAATGTATGGAAATGCCTTGGATGCCCAGACAA<br />AAGTTTGCTGCAGGAGCGAGGCCCTTATGGAGAACCTCTGCTAGGGTAGTGTGGAAAGGAAATGTGGGGTTGGAGCCCCCACACAGTGTACCTACTGGGG<br />CACTGCCTAGTGGAGCTGTGAGAAGAGGCCACCATCCTCCAGATCCCAGAATGGTAGACCCACCGACAGCTTGCACCGTGAGCCTGGAAAAGCCACAGAC<br />ACTTAATGCCGGCCTGTGAAAGCAGCCAGGAGGGAGGCTGTACCCTGCAAAGCCACAGGAGTGGAGCTGCTCAAGACCATGGGAATCCACCTCTTGCATC<br />AGCGTGACCTGAGTGTGAGACCTGGAGTCAAAGGAGATCATTTTGGAGCTTTAAGATTTGACTGCCCCACTGATCTTGGACTTGTATGAGCCCTGTAACC<br />CCTTTGCTTTGACCAATTTCTCCCATTTGGAATGGCTGTATTTACCCAGTACCTGTACCTCCATTGTATCTGGGAAGTAACTAGTTTGCTTTTGATTTTA<br />CAGGCTCATAGGCAGAAGGTACTTGCCTTGTCTCAGACGAGACTTTGGACTGTGGATTTTGGGTTAATGCTGAAATGAGTTAAGACTTTGGGGGACTGTT<br />GGGATGGCATGATTGGTTTTGAAATGTAAGGACATGAGATTTGGAGGGGCCAGGGGCAGAATGATATGGTTTGGCTATGTCCCCACATAATCTCAACTTC<br />AATTATATCTCCCAGAATTCCCACATGTTGTGGGAGGGACCCAGTGGGAGGTAATTGAATCATGGGGGCCGGTCTTTCCCATGCTATTGATAGTGAATAA<br />GTCTCACCAGATCTGATAGGTTTATCAGGGGTTTCCACTTTTGCTTCTTCCTCATTTTTCTCTTGCCGCTGGTGTGTAAGAAGTGCCTTTAACCTCCCGC<br />CGTGATTCTGAGGCCTCCCCATGTAAAACTCTAAGTCCAATTAAAACTCTTTTTCTTCCC

Expression



Full and truncated open reading frames discovered in ENST00000423984

In silico ORF/peptide predictions
>peptide 1 (81 aa)
MEMPWMPRQKFAAGARPLWRTSARVVWKGNVGLEPPHSVPTGALPSGAVRRGHHPPDPRMVDPPTACTVSLEKPQTLNAGL

>peptide 2 (80 aa)
MALLKMLIVIWTIMYRLRWSQMEMRNLLGPGAKVTCYVLAKRLAAFCPCPRDLWNFELEKDDLGYLAEEISKQQSIQKVT

>peptide 3 (57 aa)
YAKSYHYVSTKLSIFLGVAFYLDIWNETYLIFCRDLPGVSKMSQVCLYQHHENRLIQ

>peptide 4 (56 aa)
MLILKTMGKMSPGHVRDLHSSPSHHRSRGPGGKSGFVGQAQGTGAVCSLGTWRTVS


RiboTaper predictions from Ribo-Seq data (HEK293 cell line)
Nothing found.

BLAST search results

Best hit to NONCODE v4:
NONHSAT005521 (Evalue: 0)