Detailed information on ENST00000424587

lncRNA-RNA interactions

Number of interactions: 75

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
ENST00000264893 septin 11 protein coding ENST00000424587 531 297 UTR3 Trans
ENST00000355285 adenomatosis polyposis coli down-regulated 1 protein coding ENST00000424587 584 300 UTR3 Trans
ENST00000422247 centrosomal protein 135kDa protein coding ENST00000424587 606 277 UTR3 Trans
ENST00000424496 sense_intronic sense intronic ENST00000424587 649 275 noncoding Trans
ENST00000439138 transmembrane protein 98 protein coding ENST00000424587 506 278 UTR5 Trans
ENST00000482603 glyoxylate reductase/hydroxypyruvate reductase processed transcript ENST00000424587 557 277 noncoding Trans
ENST00000607772 CNKSR family member 3 protein coding ENST00000424587 632 302 UTR3 Trans
TCONS_00001594 lincRNA novel protein coding ENST00000424587 678 277 UTR5 Trans
TCONS_00021902 protein tyrosine phosphatase, non-receptor type 14 novel protein coding ENST00000424587 559 254 UTR3 Trans
TCONS_00021903 protein tyrosine phosphatase, non-receptor type 14 novel protein coding ENST00000424587 559 254 UTR3 Trans
TCONS_00030130 calcium/calmodulin-dependent protein kinase II gamma novel protein coding ENST00000424587 680 295 UTR3 Trans
TCONS_00050741 spermatogenesis associated, serine-rich 2 novel protein coding ENST00000424587 674 296 UTR3 Trans
TCONS_00050741 spermatogenesis associated, serine-rich 2 novel protein coding ENST00000424587 641 291 UTR3 Trans
TCONS_00067572 DCN1, defective in cullin neddylation 1, domain containing 2 novel protein coding ENST00000424587 684 297 UTR3 Trans
TCONS_00075917 ribosomal protein S6 kinase, 90kDa, polypeptide 5 novel noncoding ENST00000424587 641 294 noncoding Trans
TCONS_00082423 transcribed_processed_pseudogene novel protein coding ENST00000424587 615 299 UTR3 Trans
TCONS_00090939 nucleoporin 93kDa novel protein coding ENST00000424587 640 302 UTR5 Trans
TCONS_00095053 epithelial membrane protein 2 novel protein coding ENST00000424587 576 253 UTR3 Trans
TCONS_00095053 epithelial membrane protein 2 novel protein coding ENST00000424587 513 251 UTR3 Trans
TCONS_00095053 epithelial membrane protein 2 novel protein coding ENST00000424587 633 259 UTR3 Trans
TCONS_00101152 myosin phosphatase Rho interacting protein novel protein coding ENST00000424587 608 297 UTR5 Trans
TCONS_00101169 myosin phosphatase Rho interacting protein novel protein coding ENST00000424587 608 297 UTR5 Trans
TCONS_00108999 trans-golgi network vesicle protein 23 homolog C (S. cerevisiae) novel protein coding ENST00000424587 686 296 UTR5 Trans
TCONS_00109000 trans-golgi network vesicle protein 23 homolog C (S. cerevisiae) novel protein coding ENST00000424587 686 296 UTR5 Trans
TCONS_00109009 trans-golgi network vesicle protein 23 homolog C (S. cerevisiae) novel protein coding ENST00000424587 686 296 UTR5 Trans
TCONS_00109011 trans-golgi network vesicle protein 23 homolog C (S. cerevisiae) novel protein coding ENST00000424587 686 296 UTR5 Trans
TCONS_00109012 trans-golgi network vesicle protein 23 homolog C (S. cerevisiae) novel protein coding ENST00000424587 686 296 UTR5 Trans
TCONS_00109013 trans-golgi network vesicle protein 23 homolog C (S. cerevisiae) novel protein coding ENST00000424587 686 296 UTR5 Trans
TCONS_00109014 trans-golgi network vesicle protein 23 homolog C (S. cerevisiae) novel protein coding ENST00000424587 686 296 UTR5 Trans
TCONS_00109427 serine hydroxymethyltransferase 1 (soluble) novel protein coding ENST00000424587 625 274 UTR3 Trans
TCONS_00116668 desmoglein 3 novel protein coding ENST00000424587 526 298 UTR3 Trans
TCONS_00118919 potassium channel tetramerization domain containing 1 novel protein coding ENST00000424587 559 284 UTR3 Trans
TCONS_00119049 GRB2 associated, regulator of MAPK1 novel protein coding ENST00000424587 704 297 UTR3 Trans
TCONS_00123889 ribosomal protein SA pseudogene 58 novel protein coding ENST00000424587 612 260 UTR5 Trans
TCONS_00123899 ribosomal protein SA pseudogene 58 novel protein coding ENST00000424587 612 260 UTR5 Trans
TCONS_00147100 ATPase family, AAA domain containing 2B novel protein coding ENST00000424587 629 297 UTR3 Trans
TCONS_00147113 ATPase family, AAA domain containing 2B novel protein coding ENST00000424587 629 297 UTR3 Trans
TCONS_00147115 ATPase family, AAA domain containing 2B novel protein coding ENST00000424587 629 297 UTR3 Trans
TCONS_00148048 potassium voltage-gated channel, subfamily G, member 3 novel protein coding ENST00000424587 522 298 UTR3 Trans
TCONS_00149280 Uncharacterized protein {ECO:0000313|Ensembl:ENSP00000416453} novel protein coding ENST00000424587 606 297 UTR3 Trans
TCONS_00150696 septin 10 novel protein coding ENST00000424587 662 275 UTR3 Trans
TCONS_00165085 SPECC1L-ADORA2A readthrough (NMD candidate) novel protein coding ENST00000424587 627 275 UTR3 Trans
TCONS_00165089 SPECC1L-ADORA2A readthrough (NMD candidate) novel protein coding ENST00000424587 627 275 UTR3 Trans
TCONS_00165090 SPECC1L-ADORA2A readthrough (NMD candidate) novel protein coding ENST00000424587 627 275 UTR3 Trans
TCONS_00165341 TTC28 antisense RNA 1 novel protein coding ENST00000424587 625 300 UTR5 Trans
TCONS_00182611 processed_transcript novel protein coding ENST00000424587 602 275 UTR3 Trans
TCONS_00182613 processed_transcript novel protein coding ENST00000424587 602 275 UTR3 Trans
TCONS_00182614 processed_transcript novel protein coding ENST00000424587 602 275 UTR3 Trans
TCONS_00184373 neutral cholesterol ester hydrolase 1 novel protein coding ENST00000424587 686 274 UTR3 Trans
TCONS_00186316 KIAA0232 novel protein coding ENST00000424587 618 264 UTR5 Trans
TCONS_00186316 KIAA0232 novel protein coding ENST00000424587 654 301 UTR3 Trans
TCONS_00190799 sorting nexin 25 novel protein coding ENST00000424587 600 295 UTR3 Trans
TCONS_00190999 zinc finger protein 721 novel protein coding ENST00000424587 607 297 UTR5 Trans
TCONS_00190999 zinc finger protein 721 novel protein coding ENST00000424587 618 276 UTR3 Trans
TCONS_00192322 tec protein tyrosine kinase novel protein coding ENST00000424587 617 301 UTR5 Trans
TCONS_00194652 E74-like factor 2 (ets domain transcription factor) novel protein coding ENST00000424587 624 275 UTR5 Trans
TCONS_00194655 E74-like factor 2 (ets domain transcription factor) novel protein coding ENST00000424587 624 275 UTR5 Trans
TCONS_00194655 E74-like factor 2 (ets domain transcription factor) novel protein coding ENST00000424587 618 283 UTR3 Trans
TCONS_00194682 E74-like factor 2 (ets domain transcription factor) novel protein coding ENST00000424587 656 296 UTR3 Trans
TCONS_00194686 E74-like factor 2 (ets domain transcription factor) novel protein coding ENST00000424587 621 278 UTR3 Trans
TCONS_00194686 E74-like factor 2 (ets domain transcription factor) novel protein coding ENST00000424587 656 296 UTR3 Trans
TCONS_00205414 prolyl 4-hydroxylase, alpha polypeptide II novel protein coding ENST00000424587 663 288 UTR3 Trans
TCONS_00222403 protein tyrosine phosphatase, non-receptor type 12 novel protein coding ENST00000424587 649 281 UTR5 Trans
TCONS_00226753 cell division cycle associated 7-like novel protein coding ENST00000424587 631 300 UTR3 Trans
TCONS_00234854 zinc finger and BTB domain containing 10 novel protein coding ENST00000424587 614 295 UTR3 Trans
TCONS_00235205 epithelial splicing regulatory protein 1 novel protein coding ENST00000424587 606 285 UTR3 Trans
TCONS_00235219 epithelial splicing regulatory protein 1 novel protein coding ENST00000424587 606 285 UTR3 Trans
TCONS_00235231 epithelial splicing regulatory protein 1 novel protein coding ENST00000424587 606 285 UTR3 Trans
TCONS_00235685 oxidation resistance 1 novel protein coding ENST00000424587 642 296 UTR3 Trans
TCONS_00235708 oxidation resistance 1 novel protein coding ENST00000424587 657 277 UTR3 Trans
TCONS_00235906 zinc fingers and homeoboxes 2 novel protein coding ENST00000424587 532 300 UTR3 Trans
TCONS_00245543 long intergenic non-protein coding RNA 963 novel protein coding ENST00000424587 630 296 UTR3 Trans
TCONS_00247058 UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 1 novel protein coding ENST00000424587 618 277 UTR3 Trans
TCONS_00253752 queuine tRNA-ribosyltransferase 1 pseudogene 1 novel protein coding ENST00000424587 653 274 UTR3 Trans
TCONS_00256068 shroom family member 4 novel protein coding ENST00000424587 586 299 UTR3 Trans

Sequence

>TCONS_00256068 (2256 nt)
CTGATCCATATGAATTCCTCTTATTAAGAAAAATAAAGCATCCAGGATTCAATGAAGAACTGACTATCACCTTGTTAATCATTCAGAAACATGTTGCAGG
CTTAAGCCATTTTTGATATAGATACTGAAACAATTACTTGCTAAGAGCAAACTTGAAGTAACAATTTGGACAAGACAGCAAATGCTATTGTCCAAGTTTT
CTAAAGAAGAATCTGAAGTGAAATGACATCAAGAGACCTATCAAGACCTGTATCCAGGAAAAGACCAAACCAATGCAGACCAAACCAATGCAGAACTCCT
ATGTGCTGATGGTGGTCTTACATTTCCCTAAGTTTCTGCCGACTAAACTGTGCACACGTTCTCAGGACCTCCTGAAGCTGCGTCACAGGCACTAATCAAA
GAACACAACCAAGAGTTTGGCCTTTTCTTCAGCACTGGGAATTGTGATCCAAAGCTTTTCCTGATGAGGCACAAAGTTGGAGAAACACAACGCAAACTAA
ACAACAATGAAACAGAACAGAGTGAATCTGCTGTAGCTCAAGAGAGGACGTAGCTGCCCCCACTCCGCATCCCCGGGCTCGGGTTTGCCTTGCTGACCTC
TGCTGCCACCTGGTGCTGCACAGAGAAACTGAGGAGAAACCACATCAGTCTCCTTCAGCCTCAGCTTCACATCTGTGGGTCAAGCAACCCTTTCAGAAGC
TGTATAATGTGGGAAAGCTTTCCTCTCAGGAAAATGCACACATCCAACTTTGAGAAGATGCCCTTGGGGGTGCTTCAAGGATCCTAGATAATAACCCCCT
TTCCCGAACATCCAAGAACCTAAGTTTTTTTTTTTTTTTTGAGAAAGTCTCGCTCTCTCTCCCATTCTGGAGTGCAGTGGCGTGATCTTGGCTCACTGCA
AGCTCCACCTCCCAGGTTCAAGCCATTCTCCTGCCTCAGCCTCCCAAGTAGCTGGGGCTACAGGCACCTGCCACCACACCCGGCTAATTTTTTTGTATTT
TTAGTAGAGACGGGGTTTCACCGTGTTAGCCAGAATCGTCTTGATCTCCTGACCTTGTGATCCACCCGCCTCGGCCTCCCAAAGTGCTGGGATTACAGGT
GTGAGCCACCACGCCTGGTCCAAGAACCCAACTTTTAGATCTAGAGTGATGTCAGCATGACATTGATTTCCTGAGGCCCAGGGGTGAAGGAGCTGAGGAC
AGCAGAGGGGTGAAGGAAGTCAGCTACAGACAGCAGCAGCTGATGCACAGGCCTCCCAGTGCCTGAAGTCACCCGGAATTGGGAAGTGCTCAGAAGCTTA
CAAAGCTGCCTCGAGGTGGGAACACAACATTAATCCAAGAGCAGATCCCTGATCCTATAAAAATGTACTAGATGCAGTGGGGGCATTTTAAATGAGCAGG
GAAGGACAGACAGATAAACAGAAGGACAAACAGTATTGGGATTGGGATAAATGCTCAGCTTTTGCCCAAATCTTAGTGACTTAAGCATCACTTATTTGCT
CACGATTCTGTGGCTGGACCATTTGGTTTGGCTCACAGGGCAGGGACTGTGCTGGTCTTACCTGAGCAGACCTGCATGTCTGCGGTCAACTGGGTTGGCA
GAGACAGAGTGACTGTCTTCCTCCAGGAAGCAGCAGGTTAACTGGTTGGCAGAGACAGAGGGACTGAGGGACTGTCTCCCTCCAGGAAGCAGCAGGTTAA
CTGGTTGGCAGAGACAGAGGGACAGAGGGACTGTCTTCCTCCAGGAAGCAGCAGGTTGGCTCTGGTTCCTTCGTGGGGCAGCTGGTCTCCAGGGCAGCAA
GAGAGACCAAGCCCCCGTGCACATTCTACAGCCTCTGTGCACATCAGACTTGTTAATATCCCATTGGCCAGTGCAAGTCACACGGCCAAGCCCAGATTAA
GGAGTGGAAAGATGGACGCTATCTCCTCCTGGGAGAGGAGGCAAAGGAGGTGAGAGCATTATGTGGCCACTTATGTTTGCAATCTACCATACTTAGCCCT
TTGAGAAAAGAATTAACTGAGAAACTTGCTTCAAATAGGGCATTCAGTAAAATGAAGCCCCAATTGAAGTAAAATGCATATATAAAAAATGAAACTGTGA
CCGATTTTAAGGACAGTATTGGCAAATATTTCTGTGCTCTTGGAGGAGAAGACCCTTATTGGCATGACATGTCAGAGACCACAATGAAAGAATTATTTTA
ACTTGCATTCATAAAAATTAAAATTATTCATTAAAAACATCGTGAATGAAATTAAAA

Expression



Full and truncated open reading frames discovered in TCONS_00256068

In silico ORF/peptide predictions
Nothing found.


RiboTaper predictions from Ribo-Seq data (HEK293 cell line)
Nothing found.

BLAST search results

No hits found.