Detailed information on ENST00000427050

lncRNA-RNA interactions

Number of interactions: 7

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
ENST00000233154 NCK adaptor protein 2 protein coding ENST00000427050 1402 477 CDS_UTR Cis
ENST00000393348 NCK adaptor protein 2 protein coding ENST00000427050 1402 477 CDS_UTR Cis
ENST00000425756 NCK adaptor protein 2 protein coding ENST00000427050 1394 474 CDS_UTR Cis
ENST00000451463 NCK adaptor protein 2 protein coding ENST00000427050 1402 477 CDS_UTR Cis
ENST00000522586 NCK adaptor protein 2 protein coding ENST00000427050 1394 474 CDS_UTR Cis
TCONS_00140729 NCK adaptor protein 2 novel protein coding ENST00000427050 1402 477 UTR5 Cis
TCONS_00140732 NCK adaptor protein 2 novel protein coding ENST00000427050 1402 477 UTR3 Cis

Sequence

>TCONS_00140732 (892 nt)
AAAACTGAGGAAGAAAACTGACAAGGTTTTCAAGGGAATTTCCAGGCTGAGAATCTACGATGGCCAGTGAGCTGGTATGATTCATACGAAGTTCCATGTC
TCACTTATCTCTCCAAATCATGGTTCTTCACGAGGGAGCCCTTCTTCAGGCTGTTCTTCCGCTCCACGTAGTTGGACGGTACATAGCCCGTCCTGTTGGC
CGCGTTCCTCACCCGCCACCACGTCTTGGAGTCGTCCAGCAACCACAGCCGCTCGTTCTTCTTGATGTCCAGCTCCTGGTCCTGCTGGGCGGTGTAGTCC
CACTTGGCTATCACAATAACTTCTTCTGTCATCTTTCATGGAGTCCTTCTGCCAGCAAAACATTTGGAGATGCTCATTAGAGAACTACCCGGACACTTCA
TCCTTTGCACCAACTTGAAAAATTAGGCACTGACAGCTTTTATTACAACTCTGCAACCAGTTTTCTCCTGGGTCTTGAAATGCTCAACTTTAAAATGACC
TTCTTTCAACAAGCTTTAGTATTTGGTTTAGAAACAGCAACCTTATAAAACAAATCTTATGTTACTGTTTGCTGTACATGGGGAAATCTGACCCTCTAAC
AAAAACAAACTTGAAAAAAATTCTAAATAACATTATAATTAAATGAGTCCATTTCATTAAGTAACACTGCCTCCTGATAACTGTTAGGTTGACACTCATT
TTCTCAGGATATGCTGTGTCTTATAAACATATTTAATAAGTCAACATAACCAAACTACTCCTATAAATTAAAATTAACATTGTACTAATAACAAGGTGGT
ATCCTGGATTGGATCATGAAACAGAAAAAGAAAATTAATGGAAATACTGGTGAAATCAAAATAAAGTCTAAGAATAATAATAACAATAAATAA

Expression



Full and truncated open reading frames discovered in TCONS_00140732

In silico ORF/peptide predictions
Nothing found.


RiboTaper predictions from Ribo-Seq data (HEK293 cell line)
Nothing found.

BLAST search results

No hits found.