| Potential function | Interacting transcript | Gene description | Transcript biotype | lncRNA id | Alignment score (LAST) | Alignment length | Transcript region involved in interaction | Genomic orientation of interacting RNAs |
|---|---|---|---|---|---|---|---|---|
| ENST00000227155 | CD82 molecule | protein coding | ENST00000428391 | 619 | 280 | UTR3 | Trans | |
| ENST00000439138 | transmembrane protein 98 | protein coding | ENST00000428391 | 519 | 274 | UTR5 | Trans | |
| ENST00000482603 | glyoxylate reductase/hydroxypyruvate reductase | processed transcript | ENST00000428391 | 593 | 280 | noncoding | Trans | |
| ENST00000560870 | sense_intronic | sense intronic | ENST00000428391 | 500 | 273 | noncoding | Trans | |
| ENST00000620139 | melanoregulin | protein coding | ENST00000428391 | 525 | 272 | UTR3 | Trans | |
| TCONS_00001594 | lincRNA | novel protein coding | ENST00000428391 | 614 | 288 | UTR5 | Trans | |
| TCONS_00020768 | processed_transcript | novel protein coding | ENST00000428391 | 638 | 273 | UTR5 | Trans | |
| TCONS_00028040 | ankyrin repeat domain 16 | novel protein coding | ENST00000428391 | 631 | 276 | UTR3 | Trans | |
| TCONS_00030130 | calcium/calmodulin-dependent protein kinase II gamma | novel protein coding | ENST00000428391 | 629 | 271 | UTR3 | Trans | |
| TCONS_00034642 | CD82 molecule | novel protein coding | ENST00000428391 | 619 | 280 | UTR3 | Trans | |
| TCONS_00034643 | CD82 molecule | novel protein coding | ENST00000428391 | 619 | 280 | UTR3 | Trans | |
| TCONS_00067572 | DCN1, defective in cullin neddylation 1, domain containing 2 | novel protein coding | ENST00000428391 | 635 | 280 | UTR3 | Trans | |
| TCONS_00116668 | desmoglein 3 | novel protein coding | ENST00000428391 | 523 | 255 | UTR3 | Trans | |
| TCONS_00116668 | desmoglein 3 | novel protein coding | ENST00000428391 | 582 | 272 | UTR3 | Trans | |
| TCONS_00119049 | GRB2 associated, regulator of MAPK1 | novel protein coding | ENST00000428391 | 627 | 288 | UTR3 | Trans | |
| TCONS_00150696 | septin 10 | novel protein coding | ENST00000428391 | 622 | 273 | UTR3 | Trans | |
| TCONS_00184373 | neutral cholesterol ester hydrolase 1 | novel protein coding | ENST00000428391 | 635 | 271 | UTR3 | Trans | |
| TCONS_00186316 | KIAA0232 | novel protein coding | ENST00000428391 | 625 | 274 | UTR3 | Trans | |
| TCONS_00219453 | WD repeat domain 27 | novel protein coding | ENST00000428391 | 609 | 272 | UTR3 | Trans | |
| TCONS_00245543 | long intergenic non-protein coding RNA 963 | novel protein coding | ENST00000428391 | 609 | 273 | UTR3 | Trans | |
| TCONS_00247576 | contactin associated protein-like 3 | novel protein coding | ENST00000428391 | 603 | 262 | UTR3 | Trans | |
| TCONS_00247594 | contactin associated protein-like 3 | novel protein coding | ENST00000428391 | 603 | 262 | UTR3 | Trans |
>TCONS_00247594 (352 nt)
AGATGGAGTTGCTCTGTTGCCCAGGCTGGAGTGCAGTGGCATGATCTCGGCCCACTGCAACCCCTGCCTCCTGGGTTCAAGGGATTCTCCTGTCTCAGCC
TCCCAAGTAGCTGGAACTACAGGTGTGTGCCACCACGCCCAGCTAATCTTTTTTGTATTTTTGACAGAGACAGGGTTTCACTGTGTTAGCCAGGATGGTC
TTGATCTCCTGACCTCGTGATCCACCCGCCTCGACCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCACCACACCTGGCCTGCTCTTTCCTTTTGTCCAG
TCTCTCAGAGAGGCTGCCTGGATCACAGTGCTACCACCCCAATCTGGGTCTCT
In silico ORF/peptide predictions
Nothing found.
RiboTaper predictions from Ribo-Seq data (HEK293 cell line)
Nothing found.