Detailed information on ENST00000428423

lncRNA-RNA interactions

Number of interactions: 50

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
ENST00000287675 endo/exonuclease (5-3), endonuclease G-like protein coding ENST00000428423 509 281 UTR3 Trans
ENST00000378004 Rho GTPase activating protein 26 protein coding ENST00000428423 548 305 UTR3 Trans
ENST00000391877 delta(4)-desaturase, sphingolipid 1 protein coding ENST00000428423 504 287 UTR3 Trans
ENST00000463899 N-acetylneuraminate pyruvate lyase (dihydrodipicolinate synthase) processed transcript ENST00000428423 542 301 noncoding Trans
ENST00000478730 ORAI calcium release-activated calcium modulator 2 protein coding ENST00000428423 548 305 UTR3 Trans
ENST00000498813 delta(4)-desaturase, sphingolipid 1 processed transcript ENST00000428423 624 296 noncoding Trans
ENST00000513143 podoplanin protein coding ENST00000428423 565 300 UTR5 Trans
ENST00000552918 spermatogenesis associated, serine-rich 2 protein coding ENST00000428423 609 284 UTR3 Trans
ENST00000553127 spermatogenesis associated, serine-rich 2 protein coding ENST00000428423 624 303 UTR3 Trans
ENST00000591226 tropomyosin 4 retained intron ENST00000428423 619 304 noncoding Trans
TCONS_00001821 low density lipoprotein receptor adaptor protein 1 novel protein coding ENST00000428423 607 288 UTR5 Trans
TCONS_00001823 low density lipoprotein receptor adaptor protein 1 novel protein coding ENST00000428423 607 288 UTR5 Trans
TCONS_00009834 SRY (sex determining region Y)-box 13 novel protein coding ENST00000428423 616 290 UTR3 Trans
TCONS_00030591 cytoplasmic polyadenylation element binding protein 3 novel protein coding ENST00000428423 602 294 UTR3 Trans
TCONS_00030592 cytoplasmic polyadenylation element binding protein 3 novel protein coding ENST00000428423 602 294 UTR3 Trans
TCONS_00050741 spermatogenesis associated, serine-rich 2 novel protein coding ENST00000428423 624 303 UTR3 Trans
TCONS_00051891 RNA binding motif, single stranded interacting protein 2 novel protein coding ENST00000428423 622 307 UTR3 Trans
TCONS_00076763 protein phosphatase 1, regulatory subunit 13B novel protein coding ENST00000428423 640 299 UTR3 Trans
TCONS_00085508 neuregulin 4 novel noncoding ENST00000428423 623 296 noncoding Trans
TCONS_00095053 epithelial membrane protein 2 novel protein coding ENST00000428423 605 272 UTR3 Trans
TCONS_00098643 fatty acid 2-hydroxylase novel protein coding ENST00000428423 620 303 UTR5 Trans
TCONS_00098644 fatty acid 2-hydroxylase novel protein coding ENST00000428423 620 303 UTR3 Trans
TCONS_00098645 fatty acid 2-hydroxylase novel protein coding ENST00000428423 620 303 UTR3 Trans
TCONS_00098647 fatty acid 2-hydroxylase novel protein coding ENST00000428423 620 303 UTR3 Trans
TCONS_00105791 arylsulfatase G novel protein coding ENST00000428423 602 304 UTR3 Trans
TCONS_00118582 centrosomal protein 76kDa novel protein coding ENST00000428423 627 302 UTR3 Trans
TCONS_00119961 ring finger protein 152 novel protein coding ENST00000428423 507 243 UTR3 Trans
TCONS_00124891 zinc finger protein 540 novel protein coding ENST00000428423 616 286 UTR5 Trans
TCONS_00132233 zinc finger protein 43 novel protein coding ENST00000428423 639 298 UTR5 Trans
TCONS_00141667 Rho guanine nucleotide exchange factor (GEF) 4 novel protein coding ENST00000428423 601 289 UTR3 Trans
TCONS_00141679 Rho guanine nucleotide exchange factor (GEF) 4 novel protein coding ENST00000428423 601 289 UTR3 Trans
TCONS_00147093 ATPase family, AAA domain containing 2B novel protein coding ENST00000428423 630 295 UTR3 Trans
TCONS_00147100 ATPase family, AAA domain containing 2B novel protein coding ENST00000428423 612 306 UTR3 Trans
TCONS_00147113 ATPase family, AAA domain containing 2B novel protein coding ENST00000428423 612 306 UTR3 Trans
TCONS_00147115 ATPase family, AAA domain containing 2B novel protein coding ENST00000428423 612 306 UTR3 Trans
TCONS_00150696 septin 10 novel protein coding ENST00000428423 668 290 UTR3 Trans
TCONS_00192322 tec protein tyrosine kinase novel protein coding ENST00000428423 601 301 UTR5 Trans
TCONS_00194655 E74-like factor 2 (ets domain transcription factor) novel protein coding ENST00000428423 612 294 UTR3 Trans
TCONS_00196430 trio Rho guanine nucleotide exchange factor novel protein coding ENST00000428423 609 294 UTR3 Trans
TCONS_00196432 trio Rho guanine nucleotide exchange factor novel protein coding ENST00000428423 609 294 UTR3 Trans
TCONS_00199320 sorting nexin 24 novel noncoding ENST00000428423 601 287 noncoding Trans
TCONS_00213181 tubby like protein 4 novel protein coding ENST00000428423 612 301 UTR3 Trans
TCONS_00213191 tubby like protein 4 novel protein coding ENST00000428423 612 301 UTR3 Trans
TCONS_00216910 high mobility group nucleosomal binding domain 3 novel noncoding ENST00000428423 654 295 noncoding Trans
TCONS_00235205 epithelial splicing regulatory protein 1 novel protein coding ENST00000428423 601 302 UTR3 Trans
TCONS_00235219 epithelial splicing regulatory protein 1 novel protein coding ENST00000428423 601 302 UTR3 Trans
TCONS_00235231 epithelial splicing regulatory protein 1 novel protein coding ENST00000428423 601 302 UTR3 Trans
TCONS_00240688 metastasis suppressor 1 novel protein coding ENST00000428423 603 280 UTR3 Trans
TCONS_00252827 discs, large homolog 3 (Drosophila) novel protein coding ENST00000428423 605 279 UTR5 Trans
TCONS_00252827 discs, large homolog 3 (Drosophila) novel protein coding ENST00000428423 629 302 UTR5 Trans

Sequence

>TCONS_00252827 (2136 nt)
TCCGAACGCCCGCAGCAGGGTCAGAAGGGAGGTGGTCGCCCTCCGTCGTGGTCTGGCGTGTATTCCGAGCCTTGGTGTCTGGCGGTTTCCGAGCGTTGGT
GTCTGGCGGTTTCCGAGCGTTGGTGTCTTGGCGGTTTCCGACCGTTGGTGTCTGGCGGTTTCCGACCGTTGGTGTCTGGCACGCGCCACCCTCTCTTGCT
TTGGTTGCGCCATGCCGATGTACCAGACAAGAAGACAAGAAAATGATTTGAGGACAGCTTCAATCGCGGTGTGAAGAAGAAAGCAGCAAAACGACCACTG
AAAACAACGCCGGTGGCAAAATATCCAAAGAAAGGGTCCCAAGCGGTACATCGTCATAGCCGGAAACAGTCAGAGCCACCAGCCAATGATCTTTTCAATG
CTGCGAAAGCTGCCAAAAGTGACATGCAGCACCGAGAAGTCCGCGTGAAGTGCGTGAAGGCTCTGAAAGGGCTGTACGGTAACCGGGACCTGACCGCACG
CCTGGAGCTCTTCACTGGCCGCTTCAAGGACTGGATGGTTTCCATGATCATGGACAGAGAGTACAGTGTGGCAGTGGAGGCCGTCAGATTACTGATACTT
ATCCTTAAGAACATGGAAGGGGTGCTGATGGACGTGGACTGTGAGAGCGTCTACCCCATTGTGTAGGCCTCTAATTGAGGCCTGGCCTCTGCTGTGGGTG
AATTTCTGTACTGGAAACTTTTCTACCCTGAGTGCGAGATAAGAACGATGGGTGGAAGAGAGCAACGCCAGAGCCCAGGTGCCCAGAGGACTTTCTTCCA
GCTTCTGCTGTCCTTCTTTGTGGAGAGCAAGCTCCACGACCACGCTGCTTACTTAGTAGACAACCTGTGGGACTGTGCAGGGACTCAGCTGAAGGACTGG
GAGGGTCTGACAAGCCTGCTGCTGGAGAAGGACCAGAGCACGTGCCACATGGAGCCAGGGCCAGGGACCTTCCACCTCCTAGGGTGAAACCAGGAGAGAT
TGCTTGCTTCACTTGTACAAGGCAGGAACGGTGGCATGGGGTGGGGGAAACTTGGAGTTGGAAGGTGGCTAATCTTTGATTCTATGTTTTTGATCCTCCT
GGCACTCCAGACCTGGGTGATGTGCAGGAGAGCACACTGATAGAAATCCTTGTGTCCAGTGCCCAGCAACTCCTGCCTCAGCCTCCCGAGCAGCTGGGAC
TACAGGCGCCCGCCACCACGCCTGGCTAACTTTTTTGTATTTTTAGTAGAGACGGGTTTTCACCGTGTTAGCCAGGATGGTCTTGATCTCTTGACCTTGT
GATCCACCTGCCTCATCATCCCAAAGTGCTGGGATTACAGGCGTGAGCCACTGCGCCCAGCATGTTAGACAATTTTTAATTCATCCTCTCTGTGCTGTTG
TTTTCTCAGCTGTGAAAGGAATATTCTGGTGGGGACAAGGTTACAGAGTTGCTGAGAGGGTCTCATGACATGAAGGTACTGGCCTTGGCACAGTGCCTGG
GGGGGCGGGGACTCCGCACATGCCTGTGATGTCACAGTTACTGTCAGTTCACAGCGAACCTTCCCTCCTTTTCCTGTTGACTTTCCCACACTCCTGTAAC
CCTCCCTCCCTCCCTTCTTCCTCTCTCTCTCTCTCACTCACGCACACGCACACACACACACACACACACACACACACACACTCCATTCTCTGTCTCCATG
ACTCTGGAGTAAACTAACGTCTCGAGTTGCCATTGGAAGCCCCATTGTCCTCATTTTGTTTTGTTTTGTTTGTTTGAGACGGGGTCTCGCTCTGTCCCCC
AGGCTGGAGTGCAGTGGTGCGATCTCAGCCCACTGCAGCCTCCGCCTCCTAGGTTCAAGCGATTCTCCTGCCTCACCCTCCTGAGTAGCTGTGATCATAG
GTGCCCGCCACCACACCCGACTAATTTTTGTGTTTTTTAGTAGAGACAGGGTTTCACTATGTTGGCCAGGCTGGTCTCAAACTCCTGACCTCAGGTGATC
CGCCCACCTTGGCCTCCCAAAGTGCTGGGATTACAGGAGTGAGCCACCATGCCCAGCCTCCGTTGTCCTCATTTAGACTTTCATGGGTTATAGGCACTTT
TGACTTCCTGGGGTCCTTCTTCAGTTAAAAAAAAAAA

Expression



Full and truncated open reading frames discovered in TCONS_00252827

In silico ORF/peptide predictions
Nothing found.


RiboTaper predictions from Ribo-Seq data (HEK293 cell line)
Nothing found.

BLAST search results

No hits found.