Detailed information on ENST00000429124

lncRNA-RNA interactions

Number of interactions: 3

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
ENST00000338758 parvin, beta protein coding ENST00000429124 625 328 UTR3 Trans
ENST00000588483 tropomyosin 4 protein coding ENST00000429124 518 265 UTR5 Trans
TCONS_00119512 zinc finger and BTB domain containing 7C novel protein coding ENST00000429124 544 265 UTR3 Trans

Sequence

>ENST00000429124 (2597 nt)
ACGCATGCGCAAGGCTTGAATGGCGTCGGGGTTGGAGGGTTGGAAGGTCGGGAAGTGAAGGACTCGCAGGCATATTTAACAACGCAAAGTTGCTAGGAGT<br />TGGTACCAGCGTTTGGGAGGTAGAGGTGGCGCTCATGCATATTTGAGACAACATCTGGATGGTTGGGGAGAACGGTGATGCCACACTCAATCAGAAACTA<br />TGCTACTGCTGAAGAGGTATATTGAGCCCTGCCTGGTTAACCTCCAGTGAGGTTATTAGAGAATTGGGAGAGGCTCAAATCAGCATCCTGCACCTAGTTA<br />TCAAACCATTGTGAAGTCTTGATTCCTGGATGGCCAGAAAACTTGTCATTGGTCAAGAGCAACATTAAGATCTGCCTGTTACTCATACTGATGCTTCCTG<br />CCCAGCAAGTTCATCAGAGGGCGAGGATGAATTACGGTTGCCATGAATGTCCTTGTGAGGCAGTTGGGAAGCCTTGGCTGGATTGTGAAGGATATTTGAA<br />AAGTATTTTAGAGTCCACCAGATCATCCATGTGAGTGACCATGCAGCAAAAGAAGGAGGGTCCTCTCAGTGATTAAGGTAACATAGTGATTAAGGTAAGT<br />AGGGAAAGAGAGGCTTACTTTGCCCTGATTCTTGTCAGGGAGGCTCTTAGAGATGCCATTTCCAGAGCATAAGTGACAGGCCAGCATTTTCAAAGCTTGC<br />AACTTATTCTATAATATATCCTTCTTAAAACAATTCATGTAGATTATATGCTCACCCAGTCTGGGATCACTCCTGCAGAAGATCAGAAGAACTGAAATAT<br />AGGTGACATAAGCTCCTGCTTTTGTAAATGTTTTGTTGAAACACAGTTGTGTTCATCCATTATTGTCGATGGCAGCTTTCATGCTACAGCAGAGTTGAGT<br />AGTTGGGAGAGAAACCAAATGGACCATAGAGTTTGAAATATTACTGTCTGGCCCTTCACAGAAAGTTTGCCAATTCCTGGCATAGGTTAAATAAATGTAC<br />TATATCCACAAATCCTCCTCTCCCCATTTTCCTTTCAATGGGACTTGCATTTACAGTTGATCCTAGAATGTATGGAATCTCATAGTAATCAGCTTGCTTC<br />TGAATTTCTTCCCACTCAAATTAAGCTCACTCAGAAAGCACATTCACAAATTGGGCTACATATACAGAAGGAGCTATGTTTTATATGCCTCACTGTAGTC<br />AACTCATTTATCCTATATGTATGGTTCCCCCATTTTTTCCTTCTTTTCAGGGGTAACTTTTAAACTTGAGCCATTCATGAGTATCCAAAAAGTTACAACT<br />TATGTTCTCTAATTAAGACTTCATCCTTATTTTAGTATACTTCCCCTCTCTGGCTTTTTTGCATATTTCTGCAGATGTCTTGACCTTTCTGGGGAGTAAG<br />CCCCCTTAGAAGATTAATTTTCTGTAGTTCTCTATTGAGGAAATACATGACATTTAGCTTTTTAATAATTTGATGCCATTCATTGAGTACCTACTGTGTG<br />CTTTATGTACCCTGTCTCGTTGAATTTTTACAAAAAACTGAAAGAGTTAGTTTTGTGTTATTACTACCTCCATCTCAAAGATGAGTCTTGGAAAGCTTAA<br />GTAACTTTAGGTCACATTGTAATCAGTGGCAGAACTGGGACTTAAGAACATAATTCATGACTGCATTTTCTTTTCTTTCTTTCTCTTTCTTTCTCTCTCT<br />CTCTTTTTTTTTTTTTTTTAAAGAGATAGCATCTCACTCACTATGTTGCCCAGACTGGTCTTGAACTCTTGGGCTCAAGCAATTCTTCCACCTCCGCCTC<br />CCAAAGTGTTAGGATTATAGGCATGAGCCCTCATGCCTGCCCCTTGCATTTTCTATTTAAGTGATCTTGAAGTTTTTTTTTTTCTTTTTTAAATCTCGGA<br />ATTTGGCCTTTAGTAAGCATAGAATAGCAAAGTGTAATACCTGAGCTGGGGGAAAAAGTCCTTGAATTCTTTAGGAAAGACTTAATTGGTGGGTACAAAG<br />TGAAATGCTCACTGGAATCAGGAATCAGAAACCAGTTCTGATCACCTATCCCTACATATCCTTCTTCACTCTGCCCTGGCATATCATGGTTGATGTACAT<br />AGCAATGATCATCCCTTCTGTAATCCCACTTGACAGTTTAGAAGTGGATTGATAATACTCTTCTGGCTTAAAACCCTTCTTCTCTGGGCAGGTGTGGTGG<br />CTCCTACATTATCCCAGCACCTTGGGAGGCCGAGATGGGAGGATTGTGTGAGCCCAGGAGTTTGAGACCAGCCTGGGTAACATAGCAAGACCCTGTCTCC<br />ACAAAAAAATAAAAAATTAACTGGGCACGGTGGTGCTCACGCCTGTAATCCCAGCACCTGGGGAGGCCGAGGCGGGTGGATCACGAGGTCAAGAGATCGA<br />GACCATCCTGGCCAACATGGTGAAACCCCGTCTGTACTAAAAATACAAAAATTAGCCAGGCGTGATAGCAGGCGCCTGTAGTTCCAGCTATGGGAGGCTG<br />AGGCAGGAGAATCAGATGAACCTGGGAGACGGAGGTTGCAGTGAGCTGAGATCACGCCACTGCACTCCAGCCTGGTGACAGAGTGACACTCCGTCTC

Expression



Full and truncated open reading frames discovered in ENST00000429124

In silico ORF/peptide predictions
>peptide 1 (63 aa)
MESHSNQLASEFLPTQIKLTQKAHSQIGLHIQKELCFICLTVVNSFILYVWFPHFFLLFRGNF


RiboTaper predictions from Ribo-Seq data (HEK293 cell line)
peptide No. 1: MLPAQQVHQRARMNYGCHECPCEAVGKPWLDCEGYLKSILESTRSSM

BLAST search results

Best hit to NONCODE v4:
NONHSAT137627 (Evalue: 0)

Best hit to Swiss-Prot:
sp|Q8WTZ3|YS049_HUMAN (Evalue: 2.0E-13)