Detailed information on ENST00000429124

lncRNA-RNA interactions

Number of interactions: 3

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
ENST00000338758 parvin, beta protein coding ENST00000429124 625 328 UTR3 Trans
ENST00000588483 tropomyosin 4 protein coding ENST00000429124 518 265 UTR5 Trans
TCONS_00119512 zinc finger and BTB domain containing 7C novel protein coding ENST00000429124 544 265 UTR3 Trans

Sequence

>TCONS_00119512 (2596 nt)
ACGCATGCGCAAGGCTTGAATGGCGTCGGGGTTGGAGGGTTGGAAGGTCGGGAAGTGAAGGACTCGCAGGCATATTTAACAACGCAAAGTTGCTAGGAGT
TGGTACCAGCGTTTGGGAGGTAGAGGTGGCGCTCATGCATATTTGAGACAACATCTGGATGGTTGGGGAGAACGGTGATGCCACACTCAATCAGAAACTA
TGCTACTGCTGAAGAGGTATATTGAGCCCTGCCTGGTTAACCTCCAGTGAGGTTATTAGAGAATTGGGAGAGGCTCAAATCAGCATCCTGCACCTAGTTA
TCAAACCATTGTGAAGTCTTGATTCCTGGATGGCCAGAAAACTTGTCATTGGTCAAGAGCAACATTAAGATCTGCCTGTTACTCATACTGATGCTTCCTG
CCCAGCAAGTTCATCAGAGGGCGAGGATGAATTACGGTTGCCATGAATGTCCTTGTGAGGCAGTTGGGAAGCCTTGGCTGGATTGTGAAGGATATTTGAA
AAGTATTTTAGAGTCCACCAGATCATCCATGTGAGTGACCATGCAGCAAAAGAAGGAGGGTCCTCTCAGTGATTAAGGTAACATAGTGATTAAGGTAAGT
AGGGAAAGAGAGGCTTACTTTGCCCTGATTCTTGTCAGGGAGGCTCTTAGAGATGCCATTTCCAGAGCATAAGTGACAGGCCAGCATTTTCAAAGCTTGC
AACTTATTCTATAATATATCCTTCTTAAAACAATTCATGTAGATTATATGCTCACCCAGTCTGGGATCACTCCTGCAGAAGATCAGAAGAACTGAAATAT
AGGTGACATAAGCTCCTGCTTTTGTAAATGTTTTGTTGAAACACAGTTGTGTTCATCCATTATTGTCGATGGCAGCTTTCATGCTACAGCAGAGTTGAGT
AGTTGGGAGAGAAACCAAATGGACCATAGAGTTTGAAATATTACTGTCTGGCCCTTCACAGAAAGTTTGCCAATTCCTGGCATAGGTTAAATAAATGTAC
TATATCCACAAATCCTCCTCTCCCCATTTTCCTTTCAATGGGACTTGCATTTACAGTTGATCCTAGAATGTATGGAATCTCATAGTAATCAGCTTGCTTC
TGAATTTCTTCCCACTCAAATTAAGCTCACTCAGAAAGCACATTCACAAATTGGGCTACATATACAGAAGGAGCTATGTTTTATATGCCTCACTGTAGTC
AACTCATTTATCCTATATGTATGGTTCCCCCATTTTTTCCTTCTTTTCAGGGGTAACTTTTAAACTTGAGCCATTCATGAGTATCCAAAAAGTTACAACT
TATGTTCTCTAATTAAGACTTCATCCTTATTTTAGTATACTTCCCCTCTCTGGCTTTTTTGCATATTTCTGCAGATGTCTTGACCTTTCTGGGGAGTAAG
CCCCCTTAGAAGATTAATTTTCTGTAGTTCTCTATTGAGGAAATACATGACATTTAGCTTTTTAATAATTTGATGCCATTCATTGAGTACCTACTGTGTG
CTTTATGTACCCTGTCTCGTTGAATTTTTACAAAAAACTGAAAGAGTTAGTTTTGTGTTATTACTACCTCCATCTCAAAGATGAGTCTTGGAAAGCTTAA
GTAACTTTAGGTCACATTGTAATCAGTGGCAGAACTGGGACTTAAGAACATAATTCATGACTGCATTTTCTTTTCTTTCTTTCTCTTTCTTTCTCTCTCT
CTCTTTTTTTTTTTTTTTTAAAGAGATAGCATCTCACTCACTATGTTGCCCAGACTGGTCTTGAACTCTTGGGCTCAAGCAATTCTTCCACCTCCGCCTC
CCAAAGTGTTAGGATTATAGGCATGAGCCCTCATGCCTGCCCCTTGCATTTTCTATTTAAGTGATCTTGAAGTTTTTTTTTTTCTTTTTTAAATCTCGGA
ATTTGGCCTTTAGTAAGCATAGAATAGCAAAGTGTAATACCTGAGCTGGGGGAAAAAGTCCTTGAATTCTTTAGGAAAGACTTAATTGGTGGGTACAAAG
TGAAATGCTCACTGGAATCAGGAATCAGAAACCAGTTCTGATCACCTATCCCTACATATCCTTCTTCACTCTGCCCTGGCATATCATGGTTGATGTACAT
AGCAATGATCATCCCTTCTGTAATCCCACTTGACAGTTTAGAAGTGGATTGATAATACTCTTCTGGCTTAAAACCCTTCTTCTCTGGGCAGGTGTGGTGG
CTCCTACATTATCCCAGCACCTTGGGAGGCCGAGATGGGAGGATTGTGTGAGCCCAGGAGTTTGAGACCAGCCTGGGTAACATAGCAAGACCCTGTCTCC
ACAAAAAAATAAAAAATTAACTGGGCACGGTGGTGCTCACGCCTGTAATCCCAGCACCTGGGGAGGCCGAGGCGGGTGGATCACGAGGTCAAGAGATCGA
GACCATCCTGGCCAACATGGTGAAACCCCGTCTGTACTAAAAATACAAAAATTAGCCAGGCGTGATAGCAGGCGCCTGTAGTTCCAGCTATGGGAGGCTG
AGGCAGGAGAATCAGATGAACCTGGGAGACGGAGGTTGCAGTGAGCTGAGATCACGCCACTGCACTCCAGCCTGGTGACAGAGTGACACTCCGTCTC

Expression



Full and truncated open reading frames discovered in TCONS_00119512

In silico ORF/peptide predictions
Nothing found.


RiboTaper predictions from Ribo-Seq data (HEK293 cell line)
Nothing found.

BLAST search results

No hits found.