Detailed information on ENST00000434560

lncRNA-RNA interactions

Number of interactions: 7

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
ENST00000511184 E74-like factor 2 (ets domain transcription factor) nonsense mediated decay ENST00000434560 512 299 CDS_UTR Trans
ENST00000568559 transmembrane protein 170A nonsense mediated decay ENST00000434560 558 283 UTR3 Trans
TCONS_00030130 calcium/calmodulin-dependent protein kinase II gamma novel protein coding ENST00000434560 633 282 UTR3 Trans
TCONS_00067572 DCN1, defective in cullin neddylation 1, domain containing 2 novel protein coding ENST00000434560 638 298 UTR3 Trans
TCONS_00160558 cerebellin 4 precursor novel protein coding ENST00000434560 531 293 UTR3 Trans
TCONS_00161618 interferon gamma receptor 2 (interferon gamma transducer 1) novel protein coding ENST00000434560 535 297 UTR3 Trans
TCONS_00238831 cytochrome P450, family 7, subfamily B, polypeptide 1 novel protein coding ENST00000434560 565 293 UTR3 Trans

Sequence

>TCONS_00238831 (1827 nt)
TGTGTGTGTGTGTGTGTGTGTGTTTGTGAACACAACATACCTGTATGGTAGGGGTAACATTGGTTTAGATTCACTTTGTACTTCATACCTGTGTTCAAAA
GACTCAGCTGAGCCCTTTGTGAGGATATTTTGACTTTGAAAATCTGGAATTGATGACTCACTTAAAATAGTTTTATCTTGGGACTGAAACAGGGACATAG
GCATATTTTTGTATGATTCACATCAGAGCTGATAATCTTAATGGTTTGTAAAGGGCCTAAATGATTCTACAGTTTTATATAAAGCATGTTAAACTATCAA
GGCTCATTATTACATAACTATAAATGGACAGAGTTTTATAATAAGAAAAATGTACATTTGTTTAGCCATTGTCTCCTAGGAACTTCTCTCTATTATTACA
CTATTGCATTTGCAAAGGCACCAAAGGTGCAGTTTGGTTTATATACTGCAGTAGTAATTCCTAAAAGATTTAATTGTATCAGGTTTTTTAACTTAAAAAT
GGAATCCTATTTAAAGTATATCCAAATATTCGTACAATAAGAAGTTATCACAGTCTACCTATTTTGTAAATGAGGTGCAGTGTTTAGTTTTCATTGGGGT
TTTTGATTTTCTGTTTTGAGCATTTAAAACAAAATCCTTTGAAAATAGTAGTTGGTGATCACAATGGTTTATGACAATTTTAACAAATTGTATTAGAAGA
CTCTAAGGAGCTGTATTTTCAACCGTGCTTTTTCTCTTCCTTCCTTCCTTTCTCTTCCCTCACTTTTTTTCTTCCTCTTCCTTCCTTCCTTCCTTCCTTT
TTGCATTGGGGTAAGAACATAAATAATATTACATCTTTCCACTATGTCTAAAAAAGTTGGAGGTGGAGAACAGTATATTTTCCATGAAAATGTCAGCCTG
CCACATAGCTCTGCTTAGTAGGCAAACCGTTATTCATTTGGATTCTCTCTTGGCTTTACATTTGGAAACAGTTTTAGTGTTAGGTACTTATGATTGAAAA
GGAGATCTCATGTTGAGCTTTTATTGCGTTGGATGCGCTTAAAGGAGGTTTTGTAAAAGACCATTGCTTCATTAAGAAAGGAAGAAAGAAAAACAAACAA
TTACATCCAGGGAAATGCTAGGATTTTTGATAGTTTAACATGACCATGTCTTGAGCATTTTCAGTTCATAATGAGGCTTGCCCTAACTAAAATGGCATTT
CATTTCGGTTGATGTACTCTTGACATTATTGGTGACATCTGCTAAATTCTAAACCATATTTTTTTTTAAATTGATTTCATTCCTACATCATCAGCTATGA
CCACCAGTTGAGCTGGAGAGATTGGAATCTGGTGTTTTATTTATTAAAAAAGACATTTTCAGACTGCTTAGCTCACAAAGATATTTTGTATTCTTTTTCA
AAATATATTTTATTTATCATGGATGCTTGTGTTTTAAGGCTGCATATTTATTTAAAATTTATGAAGAACCCTGGAAAACATTCCCAACACAATACAAAGT
CCACACATTTGCACAATAATTAAGAATATTTGGCCGAGCACGATGGCTCATGCTTGTAATTCCAGCACTTTAGGAAGCCGAGGTGGGCGGATCACTTGAG
GTCTGGAGTTAGAGACCAGACTGGCCAACATGGTGAAACCCGTCTCTACTAAAAATACAAAAATTAGCCGGGCATGGTGGTGGGTGCCTGTAATCCCAGC
TACTCGGAAGGCTGAGGCAGGACAACTGCCTGAACTTGAGAGGTAGAGGTTGCAGTGAGCCGAGATCACACCATTGCACTCCAGCCTGGGTGACGCAGCA
AGACTCCATCTCAAAAAAAAAAAAAAAA

Expression



Full and truncated open reading frames discovered in TCONS_00238831

In silico ORF/peptide predictions
Nothing found.


RiboTaper predictions from Ribo-Seq data (HEK293 cell line)
Nothing found.

BLAST search results

No hits found.