Detailed information on ENST00000434849

lncRNA-RNA interactions

Number of interactions: 1

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
ENST00000604000 Lix1 homolog (chicken) like protein coding ENST00000434849 503 300 UTR3 Trans

Sequence

>ENST00000434849 (2369 nt)
TGTTACTTCTGTCAGAGCTGAACTTGAAATTGCCATCTCATTTTTGGAGACCTACAGTTGAATATTTGCATATCTCTGGAATGGTGTCTTAGTCTGTTTT<br />GTGCTACTATAACAGAAGACCACAGACTGAGTCATTTATAAGAGCAGAAAATTTATTTGGCTCATGGAGCAGCCTAGAACCCTACTATTAGGTCTGAGTC<br />AGTCAGATGGAAAGAAGGCGAAGTAGAAGCATCGAGGTCGAATCAGTCACACATGGACTTCCCTAGTGGACTCATTGAAAACCAGACCTTCTGAGCCACC<br />CTTGGTAGGGGCTCTGGAAGTGGCTTCTGAAGAGACCCCATTCTGCACCTCCACCAAGGGCCTGGTGGGAGAAGTGTGCCCTGCAGTGCCCTCAGAAAGG<br />CCCACTGAAACTGCAAACATTCCCTTTCTGCACTGCCATTTGGTTCATGAAGACATATGGCTGGGAGAAGTTGAGTATCCTATGTCACCTTTTAGTCCAA<br />CAATTTTATGGAGGCTTAGCATGGGCAGGCCTGGTGCCAGGTGATGAGGATGCACATGGGAGCAGATCTGGCCCTGCACATAGGAGCCCACATTTCTGGA<br />TAGTGGGGCGGAGGTGACACATGTCCACATAACTGCAGTGTACAGAGATAGCAAAACAGTAAGATACAGGATGATTGAAGGTCTGTCTGTAGCTCATCCA<br />AATGATATGGTGACCAGTTCCCAAGAGGAATCTCTACACGTTTCCTGCTATTGAGCCTATGGAGCGTGATAAAAGAAATCTGGGCTGGGTGTGGTGGCTC<br />ACGCCTGTAATCCCACCACTTTGGGAGGCTGAGGTGGGTGGATCACCTGAGGTCAGGAATTCTAGACCAGCCTGGCCAACATGACAAAACCCCTTCTCTA<br />CTAAAAATACAAAAAATTAGCCAGGCATGGTGGCAGATGCCTGTAATCCCAGCTATTTGGGAGGCTGAGGCAGGTGCCATCCCAGCCAACATGGCACCAT<br />CCCAGCCAGCATGGTGCTATCCCAGAAAATATGGCACCATTCTAACCAACATGGCACCACCCCAGCCTCAGGTATTCCTTTATAGCAATACGAATGGACT<br />AAGACACTGGCATAGCAATAACACTAATAAATATATATTGACTGAATGAAAGAACAAACATGTTATCTTTCTGAAAGAATATATTTTTTGGCCAGGCTTG<br />GTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACATGGTGAAACCCCAT<br />CTCTACTAAAAACACACACAAAAAAAATTAGCCGGGCATGGTGGCAAGCATCTGTAGTCCCAGCTACTAGGGAAGCTGAGGCAGGAGAATGGTGTAAGCT<br />TGCAGTGAGCAGAGATGGGCTTACTGCACTCCAGCCTGGGTGACAGAGCAAGACTCCGTCTCAAAAAAAGAAAAAGAAGAATGTATTTTTTACAACACAA<br />TCAAATCAATGCCTTAAAACTAGGCTGTCATCACATTTTTCCCCCCGTTTTACATACTTAAATTGGCTAAATCAAGAATAGGGGCTGGCTCTCAGTCCCT<br />ACCTCGTGGGGGGTGCCTCCCCTCCCTGCGATGGGGGTCCTAAGAGCCTGGGGCGGAAGAGGGGCTGGCTCTCAGCCACCACAAAATGGGGAGCCTTTAT<br />GTTCAGGTTTTGCCCAAGAGTCAGCTTATTTGCTTCTGGTACTAGCAGGGCAGTTGATGCCGTGGCCTTCAAACATGGGGGCCATCCTTTAGAAACCCTT<br />TCTATTTGTTTAGACACGTAGGCCACCGGCCTCAGCCAGGGCCCCAGAGTTTCGGTTAAAATTCCAGCTGCCATCTTTTCTCTATCTGACGCATTCAATG<br />GAAAAGGCTTTGTCAGATCTGGTAGCCCCGGGGCTGGGGCTGCCAGAAGTTTTTCCTTTAACTCATGAAAGACTTGCTGTTGTTGGGATCCCCATTCTAA<br />AGGTTCCCGGTCCCCGCCCCCTTTGTGACCTCATACAAAGACTTGGCTAATACTGCAAAGTTTGGGATGCACAGTCTACAAAACCCCACAGCCCCTAAGA<br />ATTCCCTCACCTGCCTTCTGCCCTTAGGCTCCGGTAGATTGCAAATGACCTGCTTTCTTTCTGTTCCCGGGCGTTTGGACCCCTGTCTTGGACCGCTGTC<br />GGATAGTAAATCCCAAGTAAGGTACCTGCCGTCGGCAGATTTGAGCTTTCTTCTTGGACACCTAATACCCAGAGTCCTCCAGGCTCCGGTAGATTGCAAA<br />TGACCTGCTTTCTTTCTGTTCCCGGGCGGCATCGGACCCGTCGGAGAGTAAATCCCAAGTAAGGTACCT

Expression



Full and truncated open reading frames discovered in ENST00000434849

In silico ORF/peptide predictions
>peptide 1 (78 aa)
MHSLQNPTAPKNSLTCLLPLGSGRLQMTCFLSVPGRLDPCLGPLSDSKSQVRYLPSADLSFLLGHLIPRVLQAPVDCK

>peptide 2 (70 aa)
MPVIPAIWEAEAGAIPANMAPSQPAWCYPRKYGTILTNMAPPQPQVFLYSNTNGLRHWHSNNTNKYILTE

>peptide 3 (56 aa)
MKTYGWEKLSILCHLLVQQFYGGLAWAGLVPGDEDAHGSRSGPAHRSPHFWIVGRR

>peptide 4 (53 aa)
MGVLRAWGGRGAGSQPPQNGEPLCSGFAQESAYLLLVLAGQLMPWPSNMGAIL

>peptide 5 (50 aa)
MEKALSDLVAPGLGLPEVFPLTHERLAVVGIPILKVPGPRPLCDLIQRLG


RiboTaper predictions from Ribo-Seq data (HEK293 cell line)
Nothing found.

BLAST search results

Best hit to NONCODE v4:
NONHSAT033586 (Evalue: 0)

Best hit to Swiss-Prot:
sp|P11227|POL_MLVRD (Evalue: 3.0E-30)