Detailed information on ENST00000435469

lncRNA-RNA interactions

Number of interactions: 1

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
ENST00000498813 delta(4)-desaturase, sphingolipid 1 processed transcript ENST00000435469 512 280 noncoding Trans

Sequence

>ENST00000435469 (678 nt)
GGACATGCCACCCCCGTTTTAGGAGAACTTGTATTTGGTTTGAGAAGGAATTGGAATCACGGCGTTATCCTACCTTCACCATTTACCCCTGATAAATTGT<br />CCACGTTTATATTTGGGAATCATATTGACAGGTCATGAAAATGAGACCAAAAGATCTCTGGAAGCGATTAATGATAAAATTTCATGGAGAAGAAGGCCTT<br />GACTACGGAGGGGTTGCCAGGGTCTCCCTCTGTCACCCAGGCTGGAGTGTAGTGGCGCGATCTCGGGTCACTGCAACCTCCCCAAGCTGGGCTCAAGAGA<br />TCCTCCCACCTCAGCCTCCTGAGCAGCTGGGACTACAGGTACAAGCCACCACAGCCAGCTAATTTTTGTAATTTTTTTGTAGAGATGGGGTTTCGCCATG<br />TTGCCTAGGCTGATCTCGAACTCCTGAGCTCAAGTAGTCTGCCTGCCCCGGCCTCCCAAAGTGCTGGGATTACAGGTGTGAGCCACCGCACCCAGCCAGT<br />GATTTATTTCTGATATTATATTTACTATAAGAATTCTTTTCTAAATATGAAAATTAGTTTTATATAAATGTAGGATAAACACTGTAGCTCTCTACTGAAA<br />TGTTTTAAGGATCATTGTAATTCTGCTTTCCCTAATCTTAAATCCAACCAAAATTAAATTATGTTTTCAATAATTCCC

Expression



Full and truncated open reading frames discovered in ENST00000435469

In silico ORF/peptide predictions
>peptide 1 (75 aa)
MKMRPKDLWKRLMIKFHGEEGLDYGGVARVSLCHPGWSVVARSRVTATSPSWAQEILPPQPPEQLGLQVQATTAS


RiboTaper predictions from Ribo-Seq data (HEK293 cell line)
Nothing found.

BLAST search results

Best hit to NONCODE v4:
NONHSAT146921 (Evalue: 0)

Best hit to Swiss-Prot:
sp|A2A5Z6|SMUF2_MOUSE (Evalue: 9.0E-13)