Detailed information on ENST00000436286

lncRNA-RNA interactions

Number of interactions: 2

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
TCONS_00193640 hematopoietic prostaglandin D synthase novel protein coding ENST00000436286 661 324 UTR3 Trans
TCONS_00193640 hematopoietic prostaglandin D synthase novel protein coding ENST00000436286 1018 474 UTR3 Trans

Sequence

>TCONS_00193640 (3279 nt)
CTAGCTCCAACCTGAGGACTGGGATCGGAGGTCTTTCCAGAAACAGAAGGCTTCTAGCTGCTCCCATGGGTTTCAGGAGGAATCCGCTTGCTTGGATCAG
CTGACCTCTGACAGTTTGTTTAGGGAAGGAGTGGGGAGTGATTGTTACAGGCCCTGCAGGGGAGAGAGCCTGTGGGTGGTGGTGCTGAGGCGTGTTTAAT
GAGGCTGTCCCTTAGTCAGGGGCTGAAGGTGGACCCTTGACATTTGGAAGCAGCGTGGAGAGTCACTGTGCACCCCCTGAGAGACGGAGGCCTCTGCCCG
GAGCAGGGAACTTCATAAGTGGCGGCCCAGAGGGAACCGTCCACAGAACCCCCTGTGTCTCCCCTCCAGAGTGTAGGTCCCTGAGGGCAGTCACCTGATC
TGTCTCAGTCACTGCAGTGTCCCCAAACAGAGCACCGCCTCAGGCACACAGAGGGCAGTGGTGAGGACTAAAGGAGGCGATGAGAAGAGAGTCCCCACAA
GGAGTCTGGCACAGAGGAAGTTTCGACGTATGCTGTCCATTGCAACTTCGACTTATGCTGCGTTTCTGTGTCGGAACAGTGGAAGACATTCAACAAGCAC
TTTGTCTCAGAGGCTTAGTTACAATTAATTGAGCCTGAAAGACCATAGACTTGAAAAAGCCCTCAAAGTGATAAAGGTAAAAAGAAAAATAAAATGACAT
CTAGCAGGCACTGAGGGCTCTACAACGTGTGGCTAGCCTGTATTCAGCACCCTACAGTGTGCAGCCAGGCTGTGCTCAGCATCCTACAGTGTGCAGCCAG
GCTGTGCTCAGTACTCTACAGTGAGTAGCCAGCCTGTGCTCAGCACTCCGCAGTGAGTGGCCAGCCTGTGCTCAGCACTCTACAGTATGTGGCCAAACTG
TGCTCAGCACTCCACAGTGAGTGGCCAGCCTGTGGTCAGGACTCTACAGTGAGTGGCCAGTCTATACTCTGCACTCTACAGTGAGTGGCCAGCCTGTACA
CAGCACTCCACAGTCGTCATCTTTTCATCATAAATCTAATGGCCACTTAATGAGGTAGACCTGTCCCATGACTTGAACTGATTTCAAAAACTCAAAACTC
ATACTCTCTTGCATTTGGCAACCAAAACACAACCCACTTCCTGGGACCTTCTGACAGCCAGGCCACGTTGAGCAAACACCGAGCCCTCTTCAGAGTTGGT
CAGCAGCCAGGTCAGCAGCGACTGGCAAGGCGACTGCTTGCCAGGTCTCCTCCAGCATGAGCTTGGGATGGAGCTGAATCCCTTTCATGCACAAGCAGAA
TTTGAAAAGGTGCGGGGCCACACTAGTACCTCTGCGTCTCCTGCCAGAGCCCACCAGCTTATTTTGCTTCTTCAGAGTCTGTAAAGCATCCTTCTGGATG
ACGAATGCCTTCCGAGGCTCCAGCCCACCAAGCCTTCCTCTAAGTTTCAGATGCAGAGGCCACCTCGGAGAACTGTGATTGTCTCCCTGCATCTCCCCAG
TGCCCCCGGATGAGTGCCACCCTCCTCACCTGCTATCACAAAGACAAGAAAGGCCATTCATAATTTAAGTCAGCCCTTTCTTTCCTGCACGCCACCAACA
TGAGTCAGATGCTGGAGGAAAAATTGAACTCTTTCTCCCAGGATACACCAAAGATCAAGCAGAATCTCATTAAGGCTCACTTCAAAGACTCGTCCTTTAT
TTCCATACAAACAAGTTTAAATTATCGTGTGTGAATCTGCTGTTAGCAGGGACTCTGTTCCATTATGCATGATTCCTTACTGTTCATATCATGAATAATG
GGCAGTGCTCCGTTAGCGATTTCCAGTAATATGCTAAACTTTGGGAGTGGTCATGGTGTTAGGTTAAAGTTCTGGTGTTTGCCTATTTTATTTCTTACTC
AAGCTATAATGGCCTGCTTCATCAAAATAGGTTTCACAGTCTTATTGTAATGAACACAGCATAACACATGTTGTGGCTATGATTTCCTTATTATTATTAT
TGAATATTTATTGAGCACTTACTATGTGTAAGGGATGGTGCTCAGTGTATGCATTGCATGCATAATATTTAATCTTCCGGAATCCCATGAAATAGCTATG
ATGATTATTCCCATTTTACTGGTGAAAAAAACTGATAATTTGAGCAGGATCTAAATTATCCACAGATAAAACTTTTTTGTGTGTTTTTGAGACAGGGTCT
CACTTTGTGACCCAGGCTGGAGTGCAGTGGTGCAATTATGGCTCACTGCAGCCTTGACTTTCCAGGCTCAAGCGATCCTCCCACCTCAGCCTCCTGAGTA
GCTGGGACTACAGGCATGCACCATCACACTGGCTAATGTTTTAAACAATTTTTGTAGAGATGGTGTCTTGCTATTTTGCCCAAGCTGGTCTGGAACTCCT
GGGCTCAAGCAATCTGCCCACTTCAGCCTCCCAAGATGATGGGAGTACAGGCATGAGCCACCGTGCCTGGCCTGATAGAACTGTTAATAAATGGTAATGC
TGATTCAAATCAGTTGGTCTGACTTCAGATACTCCTAATTATAAAATACTTTTTACAACGCTATTACTTGCTGAAGAGCTTTGGCAGATAATCGATGATT
TGGTAAGCAGGTATTTGGATGTCCAGTGCACATTTCTCATGTCCAGATGAGAAATGAATGCTCAGGGGATTGCTTGATACCTGGGAGTGAGAAAATCCTT
GTTCAAGTACTGGTTTTGACTTCACTTAATCTTGGGCAAGTCATCCAGTCTTCCTGGATGTGCTGAGGTGGTTGCATTATTGCCTTTGTAATTTTTTTTC
TTCATTTTTTTATTATACTTTAAGTTCTAGGGTACATGTGCACAACGTGCAGGTTTGTTACATATGTATATATGTGTCATGTTGGTGTGCTGCACCCATT
AACTCATCATTTTCATAAGGTATATCTCCTAATGCTATCCCTTCCCCCTCCCCCCACTCCATGACAGGCCCCTCTGTGTGATGTTCCCCATCCTGTGTCT
AAGTGTTCTCATTGTGCAATTCCCACCTATGAGCGAGAGAGAACATGCGGTGTTTGGTTTTCTGTCCTTGCGATAGTTTGCTCAGAATGATGGTTTCCAG
CTTCATCCATGTCCCTACAAAGGACATGAACTCATCCTTTTTTATGGCTACGTAGTATTCCATGGTGTATATGTGCCAAATTTTCTTAATCCAGTCTATC
ATTGGTAGACATTTGGATTGGTTCCAAGTCTTTGCTATTGTGAATAGTGCCGCAATAAACATACATGTGCATATGTCTTT

Expression



Full and truncated open reading frames discovered in TCONS_00193640

In silico ORF/peptide predictions
Nothing found.


RiboTaper predictions from Ribo-Seq data (HEK293 cell line)
Nothing found.

BLAST search results

No hits found.