Detailed information on ENST00000439075

lncRNA-RNA interactions

Number of interactions: 4

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
ENST00000448214 antisense antisense ENST00000439075 514 294 noncoding Trans
ENST00000482603 glyoxylate reductase/hydroxypyruvate reductase processed transcript ENST00000439075 507 287 noncoding Trans
TCONS_00030165 antisense novel protein coding ENST00000439075 514 294 UTR5 Trans
TCONS_00101169 myosin phosphatase Rho interacting protein novel protein coding ENST00000439075 527 286 UTR3 Trans

Sequence

>TCONS_00101169 (4506 nt)
GGAGCAGAAGACTTGTCTCTTGGCGAGGGACGGGCGCCGCTGACCCAGCACGTCCAGGACCAGTCCGTCGGCGGCCCCCACGCGGGTCCTGGGCTCCAGC
TCTTCGCCGGGGGGCGCCTCCTGCTGTTCATCCCCTCCCTCTTTTCGATCCCCAGCTTCCTCCTCTTCCTCCTCCAGCTCCAACTGCAGTGGCAAGGTCT
GGGGATTGAGAGGCCCGGCATGACTAAGAGATATCGTGAAATTACAACTCAACAATGAATTACAGCACAGGCTTTTCACAACTAAGAGACTGTCCATCAT
GGTGCCAGTTTTTCTCAAAATGGCATGTGTGCATGAAATTCTACAGGCATATGGGGTCGTGATCTGCTAATCTCCAGTTATTATACAAAACTACAGATAC
TTGAAAACAGAACCAAATAAAAATTCTAGCAGAAGAAGACAATATATGAAATTTAATAATTCATTTCCTGGGAATGACAGCAGAAAGGTGATGACAGAGG
AAAGAGCCAATAAAATTTGAAGACAGACTCCTTCCTGTTGCCTTGTGAAGAAGGCTCCTGCTTCCCCTTCACCTTCTGCGCGATTGTAAGTTTCCTGAGG
CCTCCTAGCCATGCTTCTTGTTCACTCTGCGGAACTGTCCTGAGCTGAAAAGAATATGAGAAATCGGATTTTACGACATGGTTATAGGCGGAAGGGATTT
GCCTTGTCTCAGATGAGACTTTGGACTGTGGACTTTTGAGGCTTACATTTTTTATTTTCCTAGCTGCCTAAAAGAAGATTTGATAAGAAAAAATTTTTCT
CTTAATGACCTTAAAATTTTCTCTTAATGAACAAGGTCGTTCTGGACCTTGTTCTGGAACAAAAATGATCTAGTGAGATTTAATCAATTATACTCTGGAA
GCATTTGTGACGTCTATAATTTTTCCCAGAACGGAAAATCAGCAACAGAATCCTTGAGCTCAAAGATAATCAAATCTAACTCCTGAGTTTCACAGACAAA
GATGCGGAGACCTGGGGGAATATCGTGACTTGAGAAGATAACACAGCTGTTCTCTGAGGCAGTAAGTCCCTTGGCATTACTGCTTTAACAGAAGCTGGGA
GGTTTACAGTCTGTTTACTACTTGGGCAAATCATATTAGCCAAGAAAGCAAAGTACTGATGAATTCAGTAAACAAGATAGCCATTAGAAAAACAGGATTA
AGAAAGGGCTTGAAAGAAGCTTCAAGGTGGTTATGTTTTAAGATTATGAAGCCTTTGATTCCTAGCCACAGCACTCAGTAGTTGTAAGACCAACTAAACA
ATTCACTTCTGTCTTCTGCAAATTGACTGGAATTGCAGGACATACCATATACCATGGAGCTCCTAGGAGATTCAGTGAAATAGCAAATATAGAGTGTCTG
GCATGGGATATGCAGTCTATCAATGTTAGCCTTTGCTATGTAATCCAAAGTGATTTATTCCATAAGGAAAAAATGAGTTTGTTTTTTGTTTGCTTTTCTT
GAATTCATCAGAACACAAGGCAGGGGTTTATGGAAATACAGTCTTGAAGAAAAAAATAAGTATTTTCCCCTGAGAGATGGAAACACTTGTGAAAAGAAAT
AAGTAGGAGCACAGGAGCTGGAGTAATCCTCTAGAGCAGGGGTCCCCAACCCCAGTCTGTGGCCTATTAGGAGCCCAGCCGCACAGCAGGAGGTGAGTGG
TAGGCAAATTAACATTACCACCTGAGCTCCACCTCCTGTGAGATCAGCAGTGGCATTAGATTCTTATAGAAGCACGAACACTATTGGGAACTATGCATGC
GAGGGATCTAGGTTGTGTGCTCCTTATGATAATCTAATGCCTGATGATCTGAGGTGAAACAGTTTCATCCGAAAACATTCCACCCACCACCCTGTCCATG
GAAAAATTGTCTTCCATGAAGGCAGTCCCTGGTGTCAAAAAGGTCATCGACCACTGCCCTAGAGACTTTTTTTTTTTTTGAGATGGATTCTTGCTCTGTC
ACCAGGCTGGAGTGCAGTGGAGGCATCTCTGCCCACTACAACCTCCACCTCCTGGGTTTGAGGAATTGTCCTGCCTCAGCCTCCCAAGTAGCTGGATTAC
AGGTGCATGCCACGACACCCAGCTAATTTTTGTATTTTTAGTAGAGATGGGGTTTCACCATGTAGGCCAGGATGGTCTCGAACTCTTGACCTTGTGATCC
GCCTGCCTCGGTCTCCCAAAGTGCTGGGATTACAGGGATAAGCCACCACACCCAGCCTAGAGACCTCTTTTAAAGGGACTCCTCAACAGGCTCCTCAGTC
CAGGGTCTTTGCCCTCTCCCTTGTGGCTCCTGTCTCTCCAGGGCCAGCCATGCAAAAGCACGTATCTCTCAGATCTCCCTTCCCTGGTGATTCTTTCCAT
TTTAAGGGTTTTATTGATATTCATATAGAAAAACAAACAGAAATAATATGTTGGGCAGGAGCAAAGGTTCAGGAAATTTCAAAAGGATCTTTTAGTGGTC
ACTTCCTGGGTTATGCTAAACTGCAAATGATATTAGATTTACCTTTTTCAGAAGCTATTTCTACTTTTAGACCGCCCTGTGGAATGATCCTCTTATTATT
TCTGATTCTTTTATTCTAAAAAATGGAGCAGTCGAAATTTGCCGAATGGCCATGCTATCACAACCCCAAAACTATAAAATTGTGCTATATACTTTTTAAA
CTTTTTTCTTATATATAGATTTTGTTCACCAAATCACTGCCTCAAATGTCTGGGAAATTGTGCTGAGAGATATTATTCTTAGGTATTCTGTATAGTATTT
GAAAGATTAAGAAGTATTAAATAGCAAGCTTATTAATAATTATTTATGCTTATTAGAAACTTATTAGCTACAGTAATTTGGGGTTTCCAGTTACAACCAG
ATGCTAGACTAAGATCTTTGAGGAAAAGAACATTGTCTCATCTCTGCTTCTCTAACTAGAGTTGTAGGCACATAATAGATTATCATTGAATGGTCAAATA
AGTAAAAGAACTAATAGAGAAATAACAATAAGCTGGCTGTTCATTGTTCAGTGAAACCAAATGGTCTTAATTATTTTCTAAATGTATGTTTGATCTAATT
GTACTATCATTTTGATCAAGTTCTTTCCTTAACAAGTACTTAAGGATTAATGAAATCCTTTACATAAAAAGTACTTTTTTTAGATTAAAAAATAGTTTGC
ATTTTAAAACTCTGTAAAATGCACACTAATGTCCAAACTGATGCCCAATATGCAGCCTATATCTACAGCAGCTTTTCAAATATTTGGATGCAGATTTTCA
AGTCCTAACATATGCTGCTCCAATTTCATAACAAATTTTACTTAGCAAATGAAACCAACCATGTATTTTAGTTCCAAAAGAAAAATAAAATTATTTCCAT
AGGGTTACACAAAGAATAAAAACTGTTGCATTGAGATACCAAAAACATGTAGAACTAATAAGTTCAGTGAAGTATAAGATAACTAAACAAAATACAAAAA
TCAATATACGATATACAAAAATCAGTGGTATTTTCATACGATGGTAATGAACAATCTGAAAATAAAATTAAGAAAACAATTCTATTTACAATAGCATCCA
AAATAATAAAACAGGAATAAATTTTACAAAAGAAGTGCAAAACTTATATTCTCATTTATAATGCTGAAAGAAATGTTAACAGACCTAAATAACTGGGAAG
ATATATCACGTTCATGGACTGAAGGACTCAATATTTTAAGAAGACAATACTTTCCAAATTGATCTACAGATTCATTACTATCCCTATCAAAATCTTAGCT
CACATTTTTGCAGAAATTGATGAACCAACTCTAAAATTTGTATGGGAATTGAAAGAATCCATAATAGTCAAAACAGTCTTGAAAGACAAAAAAGTTGGAG
TACTCACACTTTGCAATTTCAAACGTGCTACAAAGCTACAATCATCAAGACATTATGAAACTGGCATAAAATTTGACATATAGATGAATGGAATAAAAGT
GAGAGCCAAAAATATAGCCTCCCATTTATGACTTACTGACTTTCAACATGGACGTCAAAAGCAATTTAATGGAGGAAGAATATTCTTTTCAACAAATGAT
GCTGGGACAACTGAGTATCAACCTGCAAAAGAATGAAGTTGGACTTCTAGCTCACACCATATAAAAAAATCAACTTAAAATTGATCAAAGACTCTAATGT
CACAGCTAAAACTAGAAAACCCTTAGAAGAAAATATAGGCATAAATCTTTGTGACCTGTTGTTAGGCAATGATTTCTTAGATATGACACCAAACACACAA
GGAATAAAACAAACAAATAGATAAATTAGATTTATTCAAATAAAAAACCTTTGTGCTTCAAAGGACAATACCAAGAAAGTGAAGAGAAACAGAAAGAAAG
AAAATATTTGCAAATCATGATATCTGATAAGGGATTTGAATTTAGAATATGAAAGAACACTGAGAACTCAACAGTAAAAAGACAACCCAATTAAAAAATA
GGCAAAT

Expression



Full and truncated open reading frames discovered in TCONS_00101169

In silico ORF/peptide predictions
Nothing found.


RiboTaper predictions from Ribo-Seq data (HEK293 cell line)
Nothing found.

BLAST search results

No hits found.