Detailed information on ENST00000439562

lncRNA-RNA interactions

Number of interactions: 4

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
ENST00000336415 centrosomal protein 170kDa protein coding ENST00000439562 1088 405 CDS Cis
ENST00000366542 centrosomal protein 170kDa protein coding ENST00000439562 1088 405 CDS Cis
ENST00000481987 centrosomal protein 170kDa protein coding ENST00000439562 1088 405 CDS Cis
TCONS_00022946 centrosomal protein 170kDa novel protein coding ENST00000439562 1088 405 CDS Cis

Sequence

>ENST00000439562 (694 nt)
AGGAATCAGAAATAAGCAATAGCAGCATGGATTTCTGAAGTACTGTTGAATAAAATCTGTTCTCCGCCTTGTAATTGTTAAGTGATCGGGAGGCTCTGCT<br />GCTTGAGGTCTTGGATCACCAGATCGACCGTTGTTTCCTTCTGGTGTTTTGGAATGAACTAATGGAGGAATCTTTCGGAAGTTGAGGCTTTCATCAAAAA<br />CACGATCAACCAACTAATGGGACGAAAGCAAACCTTTATGAGAACACAGTAATTTGAAAAAGTACCAATATTGGCATTACAATTTTTATGATTAGACAGA<br />AGTTATTCCATTCTCAAGTAGTAACAGAGGCACAACATCTTCAATAAACCAATTACTCTTTCTTTTTATAAGCACTTCAAATGTATTTCCTTTATAAAAT<br />CGAGATTCATCTACACAGGTTTTATTTTCAAAATCCAAAATATATAACTATGTTAAATTTAATTCTTCCATGGATAAGATTTTCTCCAAATGGAAAACAG<br />ATGGTAAATAGAAAAAAAGCTGAGCCATGTAGATGGACAATGAGTTCATTTTACTCACATTGCCTTACCAGTGTAAAATAATGTTTCTTTTTCTTTTAGT<br />TTCCTATCTTGTTTTTTCCTCCCCAAATCCAGGTGTCAAATTTCTTCACAAGATACATAAATTGCAAATTCCAATTAAGTTTACAAAAGGAAAA

Expression



Full and truncated open reading frames discovered in ENST00000439562

In silico ORF/peptide predictions
>peptide 1 (66 aa)
MYFLYKIEIHLHRFYFQNPKYITMLNLILPWIRFSPNGKQMVNRKKAEPCRWTMSSFYSHCLTSVK

>peptide 2 (54 aa)
MDNEFILLTLPYQCKIMFLFLLVSYLVFSSPNPGVKFLHKIHKLQIPIKFTKGK


RiboTaper predictions from Ribo-Seq data (HEK293 cell line)
Nothing found.

BLAST search results

Best hit to NONCODE v4:
NONHSAT010600 (Evalue: 0)

Best hit to Swiss-Prot:
sp|Q5SW79|CE170_HUMAN (Evalue: 5.0E-26)