Detailed information on ENST00000439943

lncRNA-RNA interactions

Number of interactions: 43

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
ENST00000397755 zinc finger family member 788 processed transcript ENST00000439943 605 248 noncoding Trans
ENST00000448612 WD repeat domain 27 protein coding ENST00000439943 571 283 CDS Trans
ENST00000467462 inter-alpha-trypsin inhibitor heavy chain family, member 4 processed transcript ENST00000439943 579 258 noncoding Trans
ENST00000494969 colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage) protein coding ENST00000439943 561 273 CDS Trans
ENST00000511184 E74-like factor 2 (ets domain transcription factor) nonsense mediated decay ENST00000439943 576 275 CDS_UTR Trans
ENST00000549365 DNA-damage regulated autophagy modulator 1 nonsense mediated decay ENST00000439943 501 260 CDS_UTR Trans
ENST00000553936 gephyrin nonsense mediated decay ENST00000439943 624 260 CDS_UTR Trans
TCONS_00001594 lincRNA novel protein coding ENST00000439943 607 259 UTR5 Trans
TCONS_00011236 solute carrier family 35, member F3 novel protein coding ENST00000439943 608 258 UTR3 Trans
TCONS_00025805 zinc finger, MIZ-type containing 1 novel protein coding ENST00000439943 613 270 UTR3 Trans
TCONS_00033132 dynein heavy chain domain 1 novel protein coding ENST00000439943 609 274 UTR5 Trans
TCONS_00033132 dynein heavy chain domain 1 novel protein coding ENST00000439943 617 261 UTR5 Trans
TCONS_00070307 pecanex homolog (Drosophila) novel protein coding ENST00000439943 604 265 UTR5 Trans
TCONS_00075813 forkhead box N3 novel protein coding ENST00000439943 601 258 UTR5 Trans
TCONS_00075827 forkhead box N3 novel protein coding ENST00000439943 601 258 UTR3 Trans
TCONS_00082423 transcribed_processed_pseudogene novel protein coding ENST00000439943 654 270 UTR3 Trans
TCONS_00107864 transient receptor potential cation channel, subfamily V, member 1 novel protein coding ENST00000439943 600 265 UTR3 Trans
TCONS_00107867 transient receptor potential cation channel, subfamily V, member 1 novel protein coding ENST00000439943 600 265 UTR3 Trans
TCONS_00108999 trans-golgi network vesicle protein 23 homolog C (S. cerevisiae) novel protein coding ENST00000439943 604 260 UTR5 Trans
TCONS_00109000 trans-golgi network vesicle protein 23 homolog C (S. cerevisiae) novel protein coding ENST00000439943 604 260 UTR5 Trans
TCONS_00109009 trans-golgi network vesicle protein 23 homolog C (S. cerevisiae) novel protein coding ENST00000439943 604 260 UTR5 Trans
TCONS_00109011 trans-golgi network vesicle protein 23 homolog C (S. cerevisiae) novel protein coding ENST00000439943 604 260 UTR5 Trans
TCONS_00109012 trans-golgi network vesicle protein 23 homolog C (S. cerevisiae) novel protein coding ENST00000439943 604 260 UTR5 Trans
TCONS_00109013 trans-golgi network vesicle protein 23 homolog C (S. cerevisiae) novel protein coding ENST00000439943 604 260 UTR5 Trans
TCONS_00109014 trans-golgi network vesicle protein 23 homolog C (S. cerevisiae) novel protein coding ENST00000439943 604 260 UTR5 Trans
TCONS_00124891 zinc finger protein 540 novel protein coding ENST00000439943 632 281 UTR5 Trans
TCONS_00140732 NCK adaptor protein 2 novel protein coding ENST00000439943 639 256 UTR5 Trans
TCONS_00147826 CDC42 effector protein (Rho GTPase binding) 3 novel protein coding ENST00000439943 516 258 UTR3 Trans
TCONS_00150689 ectodysplasin A receptor novel protein coding ENST00000439943 616 274 UTR3 Trans
TCONS_00163348 runt-related transcription factor 1 novel protein coding ENST00000439943 634 268 UTR3 Trans
TCONS_00163350 runt-related transcription factor 1 novel protein coding ENST00000439943 634 268 UTR3 Trans
TCONS_00163352 runt-related transcription factor 1 novel protein coding ENST00000439943 634 268 UTR3 Trans
TCONS_00175515 transient receptor potential cation channel, subfamily C, member 1 novel protein coding ENST00000439943 623 280 UTR5 Trans
TCONS_00190999 zinc finger protein 721 novel protein coding ENST00000439943 617 260 UTR3 Trans
TCONS_00196475 F-box and leucine-rich repeat protein 7 novel protein coding ENST00000439943 602 263 UTR5 Trans
TCONS_00203663 ribosomal protein L3 pseudogene 6 novel protein coding ENST00000439943 603 262 UTR3 Trans
TCONS_00203663 ribosomal protein L3 pseudogene 6 novel protein coding ENST00000439943 595 280 UTR3 Trans
TCONS_00203984 family with sequence similarity 169, member A novel protein coding ENST00000439943 627 293 UTR5 Trans
TCONS_00203985 family with sequence similarity 169, member A novel protein coding ENST00000439943 627 293 UTR5 Trans
TCONS_00203988 family with sequence similarity 169, member A novel noncoding ENST00000439943 627 293 noncoding Trans
TCONS_00219475 WD repeat domain 27 novel protein coding ENST00000439943 571 283 UTR3 Trans
TCONS_00237103 cathepsin B novel protein coding ENST00000439943 609 265 UTR5 Trans
TCONS_00239255 tumor protein D52 novel protein coding ENST00000439943 652 265 UTR3 Trans

Sequence

>TCONS_00239255 (1440 nt)
CTCAGAAGCACGTGCGCCTTACGTAATTTCCTGTTATTCTTCGGTTTGCCTCCTCCCAGTGGCGTGGATTTGCTCCCGACCCGCTTTTGGGGCGTGCCTG
CTTCCTCCTCTCTGTTAGATCTCGCTCTGTCACCCAGGCTGGAGTGAAATGGCACAATCTTGGCTCACTGTAACCTCCGCCCCCAGGTTCGACTGATTCT
CGTGCCTCAGCCTCCTCAGTAGCTGGGATTACAGATGAGCCCCAGAGAGGCGAAGCCACTTGAGCTCGTGAGTGACAGTCAGATGTCAAGCCCTGCTCTT
TCTAAAGCGTGCTGCCTTCAGAAAAGAAGAGCCAGAAGGATGGAAATTACTTCAGAAAGATGAATACCAGCTTTGAAGGAATAAAAGCTGACGAGGAATT
GAAGGAGTTGAGGCACGAGCTTGAACAGGGTTGCATGTTTGGCCCTTGATTGTAAATGCCCATTGCTGCACCTGTTCCTGTTACTTGGGGAGTTGCAGCA
GAAGGAACAGCGGCCTGGGACTCCAGAGAACTGGGTTCCCTCTCATCCCTCCAGGGCCACCACTTCTTGTGGGCCCTTGGGCAAGTCACTGTACTTTCTG
AGTCTCAGTTTCCCCATTTGCAGAATGGAAATAACTACCCCGGTCTACCAACTTAGAAGAATTGCTTTGAGGATCTGATAAGGTGGTGTGGATGATGCTG
CCTTGGGGGCTTTACAGTCTGGAGCTCAAGGGACCCCTTAAGTTGGGCTTACTTAGTAACTCCAGGGGTGGGCAGAACAGGACTCCAATGAGGGTTTTTT
TCTTTTTCCCTTTTTTTTCTTTTCCTATCTCTTAACTTTTATCTTTATTATTTTACAATGCCCTTGTAAGATGAAACAAGTGATGCTGAAATATCTTTTT
CTTTTTTAACCTTTATTTTAGAATTGGGGTACATGTGCAGGTTTGTTACATAGGTACAGTGTGGGCTGCTGAGGTTTGGGAGTACGAATGAATTAGTCAC
CCCAGTGGTGAGCATAGTGCCCGATAAGTGGTTTTTTCAACCCTTACTCCCATCCCTCTCCATTCTTGTGTTCCCCAGTGTCTGCTGTTCCCATTTTTAT
GACCATGTGTACTCAATGTTTAGCTCCCACTTAGAAGTAAGAACATGCCCAGCACTTTGGGAGGCCGAGGTGGGTGGATCATGAGGTCAAGAGATCGAGA
CCATCTTGGCTAACAAAGTGAAACCCTGTCTCTACTAAAAACATAAAAAATTGGCCGGGTGTGGTGGTGGGCACCTGTAGTCCTAGCTACTCGGGAGGCT
GAGACAGGAGAATCGCCTGAACCGGGGAGGTGGAGGTTGCAGTGAGCTGAGATTGTACCACTGCACTCCAGCCTGGGTGACAGAGTGAGACTCCATCTCA
AAAAAATAAAAATAAAAAAATAAAAAGAATGTGGTGTATGA

Expression



Full and truncated open reading frames discovered in TCONS_00239255

In silico ORF/peptide predictions
Nothing found.


RiboTaper predictions from Ribo-Seq data (HEK293 cell line)
Nothing found.

BLAST search results

No hits found.