Detailed information on ENST00000441093

lncRNA-RNA interactions

Number of interactions: 93

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
ENST00000217185 protein tyrosine kinase 6 protein coding ENST00000441093 557 288 UTR3 Trans
ENST00000227155 CD82 molecule protein coding ENST00000441093 610 297 UTR3 Trans
ENST00000292069 zinc finger protein 667 protein coding ENST00000441093 603 292 UTR3 Trans
ENST00000304748 formyl peptide receptor 1 protein coding ENST00000441093 529 285 UTR3 Trans
ENST00000307792 sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3E protein coding ENST00000441093 586 289 UTR3 Trans
ENST00000310045 dermatan sulfate epimerase-like protein coding ENST00000441093 600 300 UTR3 Trans
ENST00000379565 ribosomal protein S6 kinase, 90kDa, polypeptide 3 protein coding ENST00000441093 659 309 UTR3 Trans
ENST00000448504 arylsulfatase G protein coding ENST00000441093 643 296 UTR3 Trans
ENST00000477205 calcium/calmodulin-dependent protein kinase II gamma processed transcript ENST00000441093 642 293 noncoding Trans
ENST00000484457 F-box and leucine-rich repeat protein 2 protein coding ENST00000441093 637 306 UTR3 Trans
ENST00000504904 zinc finger protein 667 protein coding ENST00000441093 603 292 UTR3 Trans
ENST00000560870 sense_intronic sense intronic ENST00000441093 504 270 noncoding Trans
ENST00000591790 zinc finger protein 667 protein coding ENST00000441093 603 292 UTR3 Trans
ENST00000592189 zinc finger protein 667 nonsense mediated decay ENST00000441093 603 292 UTR3 Trans
ENST00000623752 TEC TEC ENST00000441093 644 295 noncoding Trans
TCONS_00001594 lincRNA novel protein coding ENST00000441093 673 296 UTR5 Trans
TCONS_00001821 low density lipoprotein receptor adaptor protein 1 novel protein coding ENST00000441093 631 292 UTR3 Trans
TCONS_00001823 low density lipoprotein receptor adaptor protein 1 novel protein coding ENST00000441093 631 292 UTR3 Trans
TCONS_00004719 ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 3 novel protein coding ENST00000441093 668 292 UTR3 Trans
TCONS_00004721 ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 3 novel protein coding ENST00000441093 668 292 UTR3 Trans
TCONS_00010077 Ras association (RalGDS/AF-6) domain family member 5 novel protein coding ENST00000441093 641 291 UTR3 Trans
TCONS_00021902 protein tyrosine phosphatase, non-receptor type 14 novel protein coding ENST00000441093 569 253 UTR3 Trans
TCONS_00021903 protein tyrosine phosphatase, non-receptor type 14 novel protein coding ENST00000441093 569 253 UTR3 Trans
TCONS_00022048 lincRNA novel protein coding ENST00000441093 527 231 UTR3 Trans
TCONS_00028040 ankyrin repeat domain 16 novel protein coding ENST00000441093 605 292 UTR3 Trans
TCONS_00028040 ankyrin repeat domain 16 novel protein coding ENST00000441093 636 289 UTR3 Trans
TCONS_00030132 calcium/calmodulin-dependent protein kinase II gamma novel protein coding ENST00000441093 642 293 CDS_UTR Trans
TCONS_00030588 cytoplasmic polyadenylation element binding protein 3 novel protein coding ENST00000441093 637 292 UTR3 Trans
TCONS_00030591 cytoplasmic polyadenylation element binding protein 3 novel protein coding ENST00000441093 655 292 UTR3 Trans
TCONS_00034642 CD82 molecule novel protein coding ENST00000441093 610 297 UTR3 Trans
TCONS_00034643 CD82 molecule novel protein coding ENST00000441093 610 297 UTR3 Trans
TCONS_00039782 GRAM domain containing 1B novel protein coding ENST00000441093 640 307 UTR5 Trans
TCONS_00050741 spermatogenesis associated, serine-rich 2 novel protein coding ENST00000441093 637 289 UTR3 Trans
TCONS_00065093 UBA domain containing 2 novel protein coding ENST00000441093 611 305 UTR5 Trans
TCONS_00065094 UBA domain containing 2 novel protein coding ENST00000441093 611 305 UTR5 Trans
TCONS_00067572 DCN1, defective in cullin neddylation 1, domain containing 2 novel protein coding ENST00000441093 627 296 UTR3 Trans
TCONS_00075834 forkhead box N3 novel protein coding ENST00000441093 610 294 UTR3 Trans
TCONS_00075835 forkhead box N3 novel protein coding ENST00000441093 610 294 UTR3 Trans
TCONS_00075844 forkhead box N3 novel protein coding ENST00000441093 539 292 UTR3 Trans
TCONS_00075845 forkhead box N3 novel protein coding ENST00000441093 539 292 UTR3 Trans
TCONS_00076763 protein phosphatase 1, regulatory subunit 13B novel protein coding ENST00000441093 648 293 UTR3 Trans
TCONS_00105791 arylsulfatase G novel protein coding ENST00000441093 643 296 UTR3 Trans
TCONS_00107864 transient receptor potential cation channel, subfamily V, member 1 novel protein coding ENST00000441093 605 312 UTR3 Trans
TCONS_00107867 transient receptor potential cation channel, subfamily V, member 1 novel protein coding ENST00000441093 605 312 UTR3 Trans
TCONS_00109427 serine hydroxymethyltransferase 1 (soluble) novel protein coding ENST00000441093 661 309 UTR3 Trans
TCONS_00116668 desmoglein 3 novel protein coding ENST00000441093 615 296 UTR3 Trans
TCONS_00118582 centrosomal protein 76kDa novel protein coding ENST00000441093 635 289 UTR3 Trans
TCONS_00119049 GRB2 associated, regulator of MAPK1 novel protein coding ENST00000441093 635 294 UTR3 Trans
TCONS_00124891 zinc finger protein 540 novel protein coding ENST00000441093 617 264 UTR5 Trans
TCONS_00133831 carcinoembryonic antigen-related cell adhesion molecule 1 (biliary glycoprotein) novel protein coding ENST00000441093 616 297 UTR3 Trans
TCONS_00135631 zinc finger protein 841 novel protein coding ENST00000441093 665 293 UTR3 Trans
TCONS_00141667 Rho guanine nucleotide exchange factor (GEF) 4 novel protein coding ENST00000441093 663 303 UTR3 Trans
TCONS_00141670 Rho guanine nucleotide exchange factor (GEF) 4 novel protein coding ENST00000441093 663 303 UTR3 Trans
TCONS_00141673 Rho guanine nucleotide exchange factor (GEF) 4 novel protein coding ENST00000441093 663 303 UTR3 Trans
TCONS_00141679 Rho guanine nucleotide exchange factor (GEF) 4 novel protein coding ENST00000441093 663 303 UTR3 Trans
TCONS_00141681 Rho guanine nucleotide exchange factor (GEF) 4 novel protein coding ENST00000441093 663 303 UTR3 Trans
TCONS_00147100 ATPase family, AAA domain containing 2B novel protein coding ENST00000441093 649 294 UTR3 Trans
TCONS_00147113 ATPase family, AAA domain containing 2B novel protein coding ENST00000441093 649 294 UTR3 Trans
TCONS_00147115 ATPase family, AAA domain containing 2B novel protein coding ENST00000441093 649 294 UTR3 Trans
TCONS_00149280 Uncharacterized protein {ECO:0000313|Ensembl:ENSP00000416453} novel protein coding ENST00000441093 607 307 UTR3 Trans
TCONS_00150599 four and a half LIM domains 2 novel protein coding ENST00000441093 607 293 UTR3 Trans
TCONS_00150696 septin 10 novel protein coding ENST00000441093 649 294 UTR3 Trans
TCONS_00160920 protein tyrosine kinase 6 novel protein coding ENST00000441093 617 294 UTR5 Trans
TCONS_00165341 TTC28 antisense RNA 1 novel protein coding ENST00000441093 623 296 UTR5 Trans
TCONS_00165341 TTC28 antisense RNA 1 novel protein coding ENST00000441093 656 294 UTR5 Trans
TCONS_00184373 neutral cholesterol ester hydrolase 1 novel protein coding ENST00000441093 648 294 UTR3 Trans
TCONS_00184373 neutral cholesterol ester hydrolase 1 novel protein coding ENST00000441093 646 288 UTR3 Trans
TCONS_00186316 KIAA0232 novel protein coding ENST00000441093 676 295 UTR3 Trans
TCONS_00190498 palladin, cytoskeletal associated protein novel protein coding ENST00000441093 635 290 UTR3 Trans
TCONS_00190999 zinc finger protein 721 novel protein coding ENST00000441093 605 299 UTR5 Trans
TCONS_00194652 E74-like factor 2 (ets domain transcription factor) novel protein coding ENST00000441093 652 299 UTR5 Trans
TCONS_00194652 E74-like factor 2 (ets domain transcription factor) novel protein coding ENST00000441093 648 292 UTR5 Trans
TCONS_00194655 E74-like factor 2 (ets domain transcription factor) novel protein coding ENST00000441093 652 299 UTR5 Trans
TCONS_00194655 E74-like factor 2 (ets domain transcription factor) novel protein coding ENST00000441093 648 292 UTR5 Trans
TCONS_00194682 E74-like factor 2 (ets domain transcription factor) novel protein coding ENST00000441093 677 294 UTR3 Trans
TCONS_00194686 E74-like factor 2 (ets domain transcription factor) novel protein coding ENST00000441093 623 285 UTR3 Trans
TCONS_00194686 E74-like factor 2 (ets domain transcription factor) novel protein coding ENST00000441093 677 294 UTR3 Trans
TCONS_00196475 F-box and leucine-rich repeat protein 7 novel protein coding ENST00000441093 614 294 UTR3 Trans
TCONS_00203985 family with sequence similarity 169, member A novel protein coding ENST00000441093 662 293 UTR5 Trans
TCONS_00213181 tubby like protein 4 novel protein coding ENST00000441093 681 300 UTR3 Trans
TCONS_00213191 tubby like protein 4 novel protein coding ENST00000441093 681 300 UTR3 Trans
TCONS_00226753 cell division cycle associated 7-like novel protein coding ENST00000441093 616 295 UTR3 Trans
TCONS_00234854 zinc finger and BTB domain containing 10 novel protein coding ENST00000441093 625 293 UTR3 Trans
TCONS_00235205 epithelial splicing regulatory protein 1 novel protein coding ENST00000441093 630 284 UTR3 Trans
TCONS_00235219 epithelial splicing regulatory protein 1 novel protein coding ENST00000441093 630 284 UTR3 Trans
TCONS_00235231 epithelial splicing regulatory protein 1 novel protein coding ENST00000441093 630 284 UTR3 Trans
TCONS_00235281 NADH dehydrogenase (ubiquinone) complex I, assembly factor 6 novel protein coding ENST00000441093 607 294 UTR5 Trans
TCONS_00235281 NADH dehydrogenase (ubiquinone) complex I, assembly factor 6 novel protein coding ENST00000441093 616 298 UTR5 Trans
TCONS_00235685 oxidation resistance 1 novel protein coding ENST00000441093 609 295 UTR3 Trans
TCONS_00235906 zinc fingers and homeoboxes 2 novel protein coding ENST00000441093 577 301 UTR3 Trans
TCONS_00239255 tumor protein D52 novel protein coding ENST00000441093 609 297 UTR3 Trans
TCONS_00247297 family with sequence similarity 166, member B novel protein coding ENST00000441093 638 293 UTR5 Trans
TCONS_00252827 discs, large homolog 3 (Drosophila) novel protein coding ENST00000441093 608 294 UTR5 Trans

Sequence

>TCONS_00252827 (590 nt)
TAGGGTGCCCTGCCTCAAGAATTAGGTGTTGACAGTTATTAGTGTATTGCAGTCAAATCAAAGTTTCTTTGGAGTGTGGGGTGAAAATATACCAAAAGAT
TAAGTGTTTATCACTGTTGCAGTTATGGATAATTGTTATTTTCTTCCTGCTAATCTTTATCATTCATTTTTCCTTTCTTTTTTTTTTTTTGAGATGGAGT
CTTGCTCTGTTGCCCAGGCTGGAGCACAGTGGCGCGATCTTGGCTCACTGCAACCTCTGCCTTCCAGGTTCAAGCGATTCTCCTCCCTCAGCCTCCTGAG
TAGCTGGGACTACAGGCACGTGCCACCATGCCCGGCTACTTTTTGTATTTTTTAGTAGAGACAGGGTTTCAATGTGTTAGTCAGGATGGTCTTTATTTCC
TGACCTCGTGATCCACCCGCCTTGGCTTCCCAAAGTGCTGGGATTACAGGCGTGAGCCACCGCGCCTGGCCAACTGAATCGTATTCTTCTTTGTGTACTT
TCCTGTCTAGATGTTAGACTTTGCAAGCTTACTAAAGGGTGGATAATGCCTGAGCCTTCTGGAGTCCGTCAGGTGTGAAGTGAGCGCTGGA

Expression



Full and truncated open reading frames discovered in TCONS_00252827

In silico ORF/peptide predictions
Nothing found.


RiboTaper predictions from Ribo-Seq data (HEK293 cell line)
Nothing found.

BLAST search results

No hits found.