Detailed information on ENST00000446028

lncRNA-RNA interactions

Number of interactions: 2

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
TCONS_00148698 WD repeat containing planar cell polarit... novel noncoding ENST00000446028 643 354 noncoding Trans
TCONS_00148698 WD repeat containing planar cell polarit... novel noncoding ENST00000446028 846 472 noncoding Trans

Sequence

>ENST00000446028 (713 nt)
ACACAACGAAGGAGAGGAAGAAGGGAGGAAGGCACTTCACAAGCAGAGCTGAGCCAGCAGGGCAGCAAGGCAGAAAGGGACTGAGATTGTACCTGGAAGT<br />ATCCCAGTGGCTGGATATTCAAGATCATTATGTCCATGCCAGAGAAATCAAGTTATACCACCACTTCTTGGCCTTTTGCCTAAGATCAAGTGTAGAAATC<br />AAGTTAAACCAAACCAAGTGAGGATTTCAGTTATTTCTCTGAAAAGCTGGAAGTAGTCTCTTTGAAAACCAGTACAAGATAAGGATGCCCTTTCTTTCCA<br />CTCCTATTCAACATAGTATTAGAAGTTCTGGCCAGGACAATCAGGCAAGAGAAAGAAATAAAGGGTATTTAATTAGGAAGAGAGGAAGTCTAGTTGTCTC<br />TGTTTGCAGACGACATGATTGTATATTTAGAAAGCCCCATCATCTCAGCCCAAAAACTTCTTGAACTGATAAGCAACTTCATCAAAGTCTCAGGATCTAA<br />AATCAATGTGCAAGAATCACAAGGATTTATTTACATCAACAATAGGCAAGCAGAAAGCCAAATCATAGGTGAACTCCCATTTATAATTGCTACAGAGAGA<br />ATAAAGTACCTAAGAATACAGCTAAAAAGGGACATGAAGGACCTCTTCAGGGAGAACTACAAAACACTGGTCAAAGATATAAGAGAGGACACAAAGAAAT<br />GGAAAAACATTTC

Expression



Full and truncated open reading frames discovered in ENST00000446028

In silico ORF/peptide predictions
>peptide 1 (99 aa)
MIVYLESPIISAQKLLELISNFIKVSGSKINVQESQGFIYINNRQAESQIIGELPFIIATERIKYLRIQLKRDMKDLFRENYKTLVKDIREDTKKWKNI

>peptide 2 (72 aa)
TTKERKKGGRHFTSRAEPAGQQGRKGLRLYLEVSQWLDIQDHYVHAREIKLYHHFLAFCLRSSVEIKLNQTK

>peptide 3 (59 aa)
MPFLSTPIQHSIRSSGQDNQARERNKGYLIRKRGSLVVSVCRRHDCIFRKPHHLSPKTS


RiboTaper predictions from Ribo-Seq data (HEK293 cell line)
Nothing found.

BLAST search results

Best hit to NONCODE v4:
NONHSAT137268 (Evalue: 0)

Best hit to Swiss-Prot:
sp|O00370|LORF2_HUMAN (Evalue: 3.0E-70)