Detailed information on ENST00000447891

lncRNA-RNA interactions

Number of interactions: 16

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
ENST00000263955 serine/threonine kinase 17b protein coding ENST00000447891 544 276 UTR3 Trans
ENST00000448612 WD repeat domain 27 protein coding ENST00000447891 517 282 CDS Trans
ENST00000549365 DNA-damage regulated autophagy modulator 1 nonsense mediated decay ENST00000447891 536 259 UTR3 Trans
ENST00000550527 apoptotic peptidase activating factor 1 protein coding ENST00000447891 623 276 UTR3 Trans
ENST00000593250 centrosomal protein 76kDa nonsense mediated decay ENST00000447891 521 257 UTR3 Trans
TCONS_00050195 FYVE, RhoGEF and PH domain containing 4 novel protein coding ENST00000447891 604 268 UTR5 Trans
TCONS_00053421 apoptotic peptidase activating factor 1 novel protein coding ENST00000447891 623 276 UTR3 Trans
TCONS_00053851 transmembrane protein 263 novel protein coding ENST00000447891 609 268 UTR3 Trans
TCONS_00065093 UBA domain containing 2 novel protein coding ENST00000447891 604 270 UTR5 Trans
TCONS_00065094 UBA domain containing 2 novel protein coding ENST00000447891 604 270 UTR5 Trans
TCONS_00065103 UBA domain containing 2 novel protein coding ENST00000447891 604 270 UTR5 Trans
TCONS_00119512 zinc finger and BTB domain containing 7C novel protein coding ENST00000447891 549 269 UTR3 Trans
TCONS_00124891 zinc finger protein 540 novel protein coding ENST00000447891 606 270 UTR3 Trans
TCONS_00153158 serine/threonine kinase 17b novel protein coding ENST00000447891 544 276 UTR3 Trans
TCONS_00203663 ribosomal protein L3 pseudogene 6 novel protein coding ENST00000447891 532 281 UTR3 Trans
TCONS_00239255 tumor protein D52 novel protein coding ENST00000447891 603 278 UTR3 Trans

Sequence

>TCONS_00239255 (3518 nt)
AAAAAATCTTAGTGTCTGCAAAACAGGTGGGTTTAAGATTTATTGATATTAGGGAAAGTGAAATTAATGAGCTACTCAAGTTTCTGTCTTTGGTCATCAC
TGAGAGTCTATTTCCATAGGAAGAAGTCTTTGCAGAGGAAATTGAATGCTGTCTGATGCTACAATTCATATGGATCCTTTCCTGGATTGAAGCCTGACTT
TTAAAAAAGGTTTCAATAAATTGCTTATACCTATGAAGAGATGCAAAAGAACCTTCAAAATAAAGCAAAGGACTTGAAGAAAGAGAAGGAAGACATGAAG
AAGAGGATGTCATTTAGGTGAAGGGCCATGCTGGATAAGGAGCTGGCTGCCTCTGTGAACATCCTACTCAAGGCATCTTCACTGCTGTACATCCTTTTGA
AATCCCAGAGATCTTCAGTCTCCCTGTGGATTAAGGAGATGTGCAGTATTTAAAGTGGCTTCAGGAAGGCATGGAAGAGGACTGAGTGGGGAAAGCTTTT
TGTGCATGCTGCTGGCTACCTCCAGCGGCTGCCTCCAGCCTCCATCAGCTGCACTCTGGGGAAGAGGAGGCTGCCTTCTACCTCCCAGCATCTCTGGATT
TCATGTTCCTGTCAGCACAGAGGAGCTAAATGGCCTGTAGAGGCTGAAGGTCTGAGGCTCCTAAAGCTGGAAGAAAAGGCTGGGCCAGTCAGGCCAAGCA
AGAACACAGTGTAACTTGTCTCTGAGTGCTTCATGGTTAAGGGGGCTAAGCAGGCACAAGGGCATGAGGATGGTTATATGTACAGACTGAGGGGAAGAAG
CAGTGAAGATGAGACTTGCCATCTTCTTGAGTCAGTAGGCCTGCCTCAGGTGCCTAGGATGTAATTGCTCTGCTGCTTCTCATGGGGAGGAGTGGCCCTC
ATGACCTTGTTTACCTGGAAGAGTGTGGGATGAATGCCTCCTCCTATGGGGACTCGCAAGTGCTTTAGCAAAAGGATAAATTGCTAATTGTGGCATTTCG
TGGATCAGCAGGATTATTTCTCCTTGCTAAAGAGGATTTTGTTGGTCCTGAATTCTGAGGAGGTGGGACTAGGAATGGGCTCCATGAGCCTGTGTATGAC
TCAGGGAATATTAGGACTTTGGCACAGCCTCATGGGTTGGGAGTAAGTCTTGGCTCTTCCCTAGCCTGAATGACAGACATCAGATCATTCTGGTGCTTTG
TCCATGAAGATGTAGATTCTGAGCCCACCCAACTAATCTTTTCACTTGAGCACAGAAACAGCCCCGGGAATCGGACAGACCCGTGTCTTTCAGGTTTGCT
TCACAGAGCCCCAGGGGTTGACAATAGGTGCCTTGGAGACTGCCTGCATGGGGATTTTTAAAAAGCTTTCTTTGTTAAAGGTTTGTAAACCACTCCTCTG
AGCCTGTTTTCATTTTATAGATTATTCAGGGAACTGAACTGCACAGAGATCCAGAAAGTGGGTAGTGCAGGCTGTAGTGCTGATAACTACTGTACTACTT
GGATCTTTGTGCTCCCAAATACCAAATGGAAGAGGATCTCTGAGAGTCCTTTGCAAAGATCTTGTAGGGACTTTAGGCTGGGGCCTTCGGAAAATTCCAG
AGGATTCCAATGGAGATTTTGAGGGACTGACTCAGAAGAACAAAGAGAATGATAATGGTGATGTCCCTGCTTTTTACAACAGATCATGTTCTGATATATA
TGCAAATCTGTGTAAAGTAAACCCTACCTAAAATGTACTGGGGACCCAAGATGGACTGCCTGTATTGCTTCCAGGATAAAGTCCAATTTCTAGCTCTGGT
TTTTATAACCTTGCTTCAGCTCACCTTTTCCGTCATCATCCCCTCCATCTCCTCTCCCACGCTGGGAAATGGATGGCTGCACTATACTGTGTGATGTTAT
TGCTATGTTCATGCCATCCCCTCTGCCTGGAATGCCCTTCTGCATGAATGCCTGTGAAATGTTGTTGCTCCTTTGTATGGCCTGGCTTCCGTGGTTGGCA
GGAATCTCTTCTTTCGTGGTATTCCTGTCATCTTTGTGCATCACAGTCAGCTTTGTATTCCTAGCTTGTAAGCTACTTGAGGATAGGGGCATGTCTGAAT
CTATTTAATCTCTTGCACCTGTTTGGCAAATTGATGTTTTAAGTATTTAAATAACTAAAGCTCTCTCTACAGTACATACTCACTTTTGATTTATGAATTG
GCAAAATTCAACTTTTTTCCTTGAATATTCTTAAAGTGAGATGAATTCCAAAGGAGAGTGTTCTGTGTGTGGCCTTCATTGAGTGGTTTTCTGTTACCAG
AAAGCTCTTGGTGGCCTTCCTCTTCCCTGGTGTCAAGGTTGACTGTTATAGGAAATGGGAGGGGAGAGGGCCGTTTCTGCCACGCATTGTCCTAGGTTCT
TAACATTATTTAATCCTTATAATGCAATGTTATCCTCATTTTACAGATGAAACCTGAGACCAAAGAACATGTAACACATAAAGTACATTGCAGAGTTAGG
ATGTGAACCCAACTCTGATTCTAAACCTAATGCTCTCACTCTTTCATTCAGAGGTTCAGTCAGTTCTTTGTAGGCTGTAGATCCAGAGAAGCTGCCGTAG
CCAACAATGAAGTTGTTAGTTTTTAAAACATCTATGTGGTAAGTTGGTCTGGCACTTAAAAATGTATTGTTTCCCAGGCACGGTGGTTCACACCTGTAAT
CCCAGCATTTTGGGAGGCCGAGGCAGGCGGATCATTAGGTCAAAAGATTGAGACCATCCTGACCAACATGGTGAAACCCCGTCTCTACTAAAAGTACAAA
AATTAGCTGGGTGTGGTGGCGCATGCCTCTAGTCCCAGCTACCTGGGAGGCTGAGGCAGGAGAATTGCTTGAACCCAGGAGGCAGAGGTTGCAGTGAGCC
AAGATCATGCTACTGCACTACAGCCTGGCAACAAAGCGAGACTCTGTCTAAAATATATATATATATATATATTGTTTACTACTCACCACAGATCTGCAGG
AGTTCACTGATCTCTAGGATCTGCCTTAACTCCAACTTACATGTTTTGGTCACTATTACAAACTGTCATCCCAGAATGATGCTGCAGAGGCTAGGGCTAG
GACACAGACCAGTGTTTCCATGTGGGAATTCCCTCCCAGTATTTCTTAGGAAATGTATGTTTTTTGAATCCATAATCCCTAGAAAAATCAGTTGAGGAAA
TGAGAAGTATTGTAATTATTCTGTGAATAGTAACACTTACCATTATGGAGACATCACTAGTTTGAAAGAATCCAACTTCATCAAATATTAACGTACCGAG
TTGAAGGCTACAAGAACTGAGACAGGAGCATAGCAGAGAGAAACGGTCACCATCTCATTAGCCCTATTTTTGGTTGTTGTGATGCCATTACATCTGTATA
TCTGGCCATATCAGCTGCTAATGGTGAGTTCTTGCAAACAAAATGATTTGATAAACAACCTACCATACTTTATACAAATCTTATGGTGTTCCGAGAAATA
AACTTTGGAAGCAAAATAA

Expression



Full and truncated open reading frames discovered in TCONS_00239255

In silico ORF/peptide predictions
Nothing found.


RiboTaper predictions from Ribo-Seq data (HEK293 cell line)
Nothing found.

BLAST search results

No hits found.