Detailed information on ENST00000450909

lncRNA-RNA interactions

Number of interactions: 20

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
ENST00000330676 TLC domain containing 2 protein coding ENST00000450909 603 278 UTR3 Trans
ENST00000353047 cathepsin B protein coding ENST00000450909 632 426 UTR3 Trans
ENST00000409359 Rho guanine nucleotide exchange factor (... protein coding ENST00000450909 526 282 UTR3 Trans
ENST00000482603 glyoxylate reductase/hydroxypyruvate red... processed transcript ENST00000450909 501 288 noncoding Trans
ENST00000593250 centrosomal protein 76kDa nonsense mediated decay ENST00000450909 614 281 UTR3 Trans
ENST00000621141 G protein-coupled receptor 1 protein coding ENST00000450909 541 287 UTR3 Trans
TCONS_00021902 protein tyrosine phosphatase, non-recept... novel protein coding ENST00000450909 600 305 UTR3 Trans
TCONS_00021903 protein tyrosine phosphatase, non-recept... novel protein coding ENST00000450909 600 305 UTR3 Trans
TCONS_00030588 cytoplasmic polyadenylation element bind... novel protein coding ENST00000450909 651 436 UTR3 Trans
TCONS_00043422 vacuolar protein sorting 37 homolog C (S... novel protein coding ENST00000450909 678 430 UTR5 Trans
TCONS_00065103 UBA domain containing 2 novel protein coding ENST00000450909 605 288 UTR5 Trans
TCONS_00065859 ubiquitin specific peptidase 12 novel protein coding ENST00000450909 650 287 UTR3 Trans
TCONS_00065864 long intergenic non-protein coding RNA 4... novel protein coding ENST00000450909 626 430 UTR3 Trans
TCONS_00148387 reticulon 4 novel protein coding ENST00000450909 651 289 UTR3 Trans
TCONS_00148389 reticulon 4 novel protein coding ENST00000450909 651 289 UTR3 Trans
TCONS_00190999 zinc finger protein 721 novel protein coding ENST00000450909 605 267 UTR5 Trans
TCONS_00194686 E74-like factor 2 (ets domain transcript... novel protein coding ENST00000450909 632 288 UTR3 Trans
TCONS_00195633 aspartylglucosaminidase novel protein coding ENST00000450909 511 287 UTR3 Trans
TCONS_00237101 cathepsin B novel protein coding ENST00000450909 632 426 UTR3 Trans
TCONS_00237103 cathepsin B novel protein coding ENST00000450909 632 426 UTR3 Trans

Sequence

>ENST00000450909 (1762 nt)
GGTGATGCCGAGCTGAAGCTGGGAAGCGGATGTGAGGGAAGAGTTCCAGGCAGAGGGAAGGCAAATGCAGAGATCCTCAGGCAGGAACACTGAACTGTTC<br />TCCGTATTTGAGGAGCAGAGGGCGTGTCAGTGGTGGCCGCAGCAGCTGAGCAAAGGTCTTAGAATCCCAGCTAATGTCGTGGGACCTAGCACCCAATCCC<br />AAAAGAAAGAAGAATAGATAGGAACCCACTGTTGACAAGAAGGTGCACTGAGAAGTGTTTTTATCTGACCCGATCTGCATCCAGTTTAGAAGCCGATACA<br />TCAGGGATTTAACAATCTGTCTTAATGTCTAGCAAGGGGGGTTGCTGGAGGGAAAACACAGAGTCAGAGTTCTATCTTCAGCCCTGCCAGCAGGTCCCTG<br />GGAGATGCTAGACGAGTGACTTTTCTCTGGGCGTGGTTGGTGTAAGGGATGCACACGCAGGAGGAAGGTCGGAGTGTAAATGTGTGACCTGGGCCTGTTA<br />CTGGGTATAAATGGGCCTGTAGTGACCGGGAGCTCATGTTCTACCAAAGGGGTTGCCAATTTTCTGATTTCGAGTGTGGCGGTGTAAAAGAGAAAAGCAA<br />CTGCTGCCAGCTGGGAGCTGGTTTGCACCCTCACTCCAGAAGCCTTGATGTTGCTAGGAGCTGACCTGGCACCAACAGCACGGCCATGGTGGTGTCCTGT<br />TGAGCAAAATAATTTCACAAAAAACATCAGACAAGGTCACTCTCTGACTGATCTAGAAAAAGACCATTCCATAATAAAGCCTCAATACAGAAACAAGAAC<br />ATTGTCCAAACCACAAAAATTACCAACACAATCCTCTCTCCCACAGCGTAAGTTACTGCTGCTTTTTTTTTGGTTGTTGTTTTTGTTTGTTTTGTTTTGT<br />TTTTGAAATGAAGTCTTGCTCTGTTACCCAGGCTGGAGTGCAGTGATGCAATCTTGGCTTACCACAACCTCCACCTCCAGGTTCAAGCGATTCTCCTGCC<br />TCAGCTTCCAGAGTATCTGGGATTACAGGCACCCACCATCATGCCCAGATCATTTCTGTATTTTTAGTAGAGACGGGGATTCACCAAGTTGCCCAGGTGC<br />TTCCTGGTGGTCCTTGGTTGGAGGGTACTATCAGAAATGGAGGAGCAACAAAGATTCAGCTGAAGCCCTCACTGCCTGGGACTGGGACCCTTGACTCGTC<br />ATTGTATGCACACCTGAAACTGCTTATGTCGCTGAGGTGCCAACCTGCTGATGGTTGGAAGCTAATTGAGTTCTGATATTGTGTTGATACCCTTAAGCAT<br />TGGGTTTACTTTTTATTTTAATTAATTAATTAATTAATTTTTGAGACAGAGTTTCACTCTTGTTGCCCAGGCTGAAGTGCAATGACACGATCTCGGCTCA<br />CCGCAACCTCCGCCTCCTGGGTTCAAGCAGTTCTTCTGCCTCAGCCTCTTGAGTAGCTGGGATTACAGGCATGCACCACCACACCTGGCTAATTTTATAT<br />TTGTAGTAGAGACAGTTTCTCCATGTTTGTCAGGCTGGTCTCAAACTCCTGACCTCAGGTGATCCACCCGCCTCGGCCTCCCAAAGTGCTAGGATTACAG<br />GCGTGAGCCACCATGCCTGGCCATATTTTTTATTTTTCATTTTTTACTTTTTGAGATAGGGTCTCACTCTGTTGACCAGGCTGGAGTGCAGTGGTACGAC<br />TCAGCTCACTGCAACCTCTGCTTCCCAGCTCAAGTGATTCTCCAGTTTCAGCCTCCTGAGTA

Expression



Full and truncated open reading frames discovered in ENST00000450909

In silico ORF/peptide predictions
>peptide 1 (82 aa)
MQSWLTTTSTSRFKRFSCLSFQSIWDYRHPPSCPDHFCIFSRDGDSPSCPGASWWSLVGGYYQKWRSNKDSAEALTAWDWDP

>peptide 2 (67 aa)
MLLGADLAPTARPWWCPVEQNNFTKNIRQGHSLTDLEKDHSIIKPQYRNKNIVQTTKITNTILSPTA

>peptide 3 (50 aa)
MQRSSGRNTELFSVFEEQRACQWWPQQLSKGLRIPANVVGPSTQSQKKEE


RiboTaper predictions from Ribo-Seq data (HEK293 cell line)
Nothing found.

BLAST search results

Best hit to NONCODE v4:
NONHSAT141672 (Evalue: 0)

Best hit to Swiss-Prot:
sp|Q8N2A0|CX062_HUMAN (Evalue: 4.0E-20)