Detailed information on ENST00000453159

lncRNA-RNA interactions

Number of interactions: 3

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
ENST00000302907 ribosomal protein S9 protein coding ENST00000453159 1487 686 CDS_UTR Trans
ENST00000391752 ribosomal protein S9 protein coding ENST00000453159 1432 655 CDS_UTR Trans
ENST00000391753 ribosomal protein S9 protein coding ENST00000453159 1438 657 CDS_UTR Trans

Sequence

>ENST00000453159 (1499 nt)
GCCGCGGTGTGAGGGAGCGGGAGTCTTCCTTAGCTTCTCCGCCATGGGTGTCGCTTCGTAGCCGGGCTGCTCCGGGAAAGGCCTCGTACAGCACGCATTC<br />ACCAGAATCCTGTCAGCTTTCCTCTTCTCATCCAGACGCCTGGCCAGGATCCTCGATAAGACCGTGACCCCCAACTTGGACACCCCATAAGGAAAACTAG<br />ACAATCCACCAGCCCAGGAGGGGACAAGCAGGCTTATTCCTCCTCCTCGTCATCTCTGGCTCCAGCCCCACCCTGGCCCTTGCTGGCATTCTTCCTCTTC<br />ACGTGGCTGGGGTTGGCCACCCCAATAGGGAAGCAGAGGGAGAAGTCAATGTGCTTCTGGGAATCCAGGCGGACAGTGAAGAACAGGATATTTACCACCT<br />GCTCACGGACACGGATATGACACTGTTGAATCAGCACATGAGCGTGGCGGATGGACTTAGCCAAGCCAAGCTTGAAGACCTGGGTCTGTAGGAATCTCTA<br />AGAAATCATTGATCTTCAGGCCCAGGATGTAATCCAGCTTCATCTTGCCCTCATCCAGCACCCCAGTGCGGACCAGCCACTGCAGCAGGGCAATGCCTTC<br />GAACAGACGCCGTGGGTCCTTCTCATCAAGCGTCAGCAGCTCCCGGGCGGCCTTATGGATCTTGACCAGGGTAAATTTGACCCTCCAGACCTCACATTTG<br />TTCTGGAGCCCATACTCACCAATCAGCTTTAGCTTTTGGTCGAGATGAGGTTTCTCGAAGGGTCTCTGCAGGGTCACATAAGTTTGGCAACAAACCCAGC<br />TCTGGGCCGCTGGCATGTTGGCTCCACTTGCCCGTCTATGCCTAAGCACAGGCCCTGGTCACTGAGAAAGAGCTCAAATTTTTTATATATTTCATCTAAG<br />GTGTTGATTCTATTGATACCCTTATCCTTTTAACATGCCCTTATCCTTTTAATGTTGGTAATGATGCTACCTGTCATTTCTGAGACTGGTTTGTGTCTTT<br />CGTGTTTTTTTCTGATCTGTCTGGCTAGAGGTTTACCAATTGATTTGATTTTCCTCAAACTTCTGGTTACAATGATTCTCTCTCTCTCTCTTTTCCTGAT<br />TATATTAATTTCTGTTCTGATCTTTGTTTCCTTTCTTCTGCTTACTGGATTTTATTTGCTCTTTTTCTGGTTTCTTACTGTAAAGGCAGAAGTCATTGAT<br />TTGCATTGATTTGAGACTTCTTTTCTAATGTAGGCAGTAAGTGGTGTAAATTCCCTTTTAGTATGACTTTAGTGGCATCTCACATTGATATGTTTTCAAT<br />TTCATTCAGTTTATTTTTATTTATTTTTTAAATTATTTATTTATTTATTTATTTTGAGTTGTGTAGCCCTTTATTAGCAACTAAAATAGAAGGTATCTGT<br />TGTACAACATGGGTAGTAATTGACTATAACTGGAGATTTATTATATTCTAATACAGATCATTTATAAATGCAATTTCTTTATTAAAAAGCTTCCACCTT

Expression



Full and truncated open reading frames discovered in ENST00000453159

In silico ORF/peptide predictions
>peptide 1 (85 aa)
MLVMMLPVISETGLCLSCFFLICLARGLPIDLIFLKLLVTMILSLSLFLIILISVLIFVSFLLLTGFYLLFFWFLTVKAEVIDLH

>peptide 2 (62 aa)
MRFLEGSLQGHISLATNPALGRWHVGSTCPSMPKHRPWSLRKSSNFLYISSKVLILLIPLSF

>peptide 3 (54 aa)
RGVRERESSLASPPWVSLRSRAAPGKASYSTHSPESCQLSSSHPDAWPGSSIRP

>peptide 4 (51 aa)
MPSNRRRGSFSSSVSSSRAALWILTRVNLTLQTSHLFWSPYSPISFSFWSR


RiboTaper predictions from Ribo-Seq data (HEK293 cell line)
Nothing found.

BLAST search results

Best hit to NONCODE v4:
NONHSAT081949 (Evalue: 0)

Best hit to Swiss-Prot:
sp|P29314|RS9_RAT (Evalue: 1.0E-68)