Detailed information on ENST00000454596

lncRNA-RNA interactions

Number of interactions: 5

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
TCONS_00148698 WD repeat containing planar cell polarit... novel noncoding ENST00000454596 804 1227 noncoding Trans
TCONS_00148704 WD repeat containing planar cell polarit... novel protein coding ENST00000454596 804 1227 UTR3 Trans
TCONS_00148705 WD repeat containing planar cell polarit... novel protein coding ENST00000454596 804 1227 UTR3 Trans
TCONS_00156217 antisense novel protein coding ENST00000454596 888 853 UTR5 Trans
TCONS_00156217 antisense novel protein coding ENST00000454596 968 789 UTR5 Trans

Sequence

>ENST00000454596 (2305 nt)
ACAAAGCCTGTTTGGTGGTCTCTTCACACGGACGCGCATGAAATTTGGTGCCATGACTCGGATCGGGGGACCTCCCTTGGGAGATCAATCCCCTGTCTTC<br />CTGTTCTTTGCTCCGTGAGAAAGATCCACCTACAACCTCAGGTCCTCAGACCGACCAGCCCAAGGAACATCTCACCAATTTTAAATCAGCTCCAGGAGAA<br />TGGGTGACTTGAACTGGCAAGGAGCAACCTGCTCTCTCCACGGGCCTCTGGAACCCCGGCAAGAGAAGATCCCTTGATCACCATGGACACTCAAGTTGGC<br />AAGAAGAGCTCCTTAGAGAAGTCGTGGGAGGGCAAGCAAGCTGATGTGGAGCCAGGACGATTTGATGTGGGAGCACCTGCAGTGGAGCACAGCCAGGGAG<br />AGCCATCTCCCCAGGCCTGACTTGCTCCCATAGGAGACTTTAGCCCTAGGGGAACTGTCCATCCTGATCTCTGCAGGGTGGTCTTGTCCATCAGACAGGG<br />CTGATTCGACCTGAGCACCCCTTGGTCTGCTGGCCTTTCTGGGGTCCCAGCCTGGCCAGACCTGCTTGCAGGGCAGTCTTGGGTGCCCTGGAGGCCACGC<br />CATAGCTTCTGTGCTGGCAGATAGTATCTGACTGGTGGAGAGCTCCAGCAAGGCTGCCCCTAGGCCACACACCAGCCCATCCACCCCCTCCCCACACTGC<br />AGCTTCCCTAGGCCCAGGAAACTCCTCACGTGTCTTTGCTGGCACAAGTCTGCACAGGTAGGTTTTGCCTTCCTTGCCCTGCCAGTGCATGGGAGTGTAG<br />TCTGCCCCCCTGCCCCGTCTGGCTGTCATTGAAGACAGAGCCTTGGTGGGCACAGAGCAAGCCAGCTCCCCCGCAACGCCCACCTCAACACCTGGCCCTT<br />GTGCTAACACTGTGCAGAGAACAGTGGACCCTGCTCGCACCCTGAGTGATCACTCCTGCTTGTGGGGCACAGAGAAGGTGTCCAGACCTGCTCACGCCAG<br />TGCCCTGCCCCCAAGCCAACACCACATCCAACAGGAGCCTGCACCCAGTCTTCAGCATAGAGGTGAAAGATCTCTACGAGGAGAACTATGAAACACTGCT<br />CAAAATAATCAAATATGATACAAGCAAATGGAAGAGCATGCAATGCTCATGGATAGGAAGAATCAATATCATAAAAATGGCCATACTGCCCAAAGCAATT<br />TATAGATTCAATGCTATTCCTATTAAACTACCATTGATATTCTTCACAAAACTAGAGAAAACTATTTTAAAGTTCATATGGAACCAAAAAAGAGCCTGAA<br />TAGCCAAGGAAATCCTAAGCAAAAAGAACAAAGCTGGAAGCATCATGCTACCCAACTTCAAACTATACTACAGGACTACAGTAACCAAAACAGCGTGGTA<br />CTGGTACAAAAACAGACACATAGACCAATGAAACAGAATAGAGAACCCAGAAATGGTTCTCTATTTCACACACCTACAACTATCTGATCTTCGACAAACC<br />TGATAAAAACAAGCAATAGGGAAATGATTCTGTATTCATTAAATGATGCTGGAATAACTGGCTAGCCATATGCTGAAGATTAAAACTGGACCCCTTCCTT<br />ATACTGTACACAAAAATCAACTCAAAATGGATGAAAGACTTAAATGTAAAACCCAAAACTATAACAACAATAGAAGACAACCTAGGCAATACCATCTTGG<br />ATATAGGAACAGGCAAAAATTTCATGACAAAGACACCAAAAGCAATTGAAACAAAAGCAAAAATTGAAAAGTGGGTTCTAAATAAAACTAAAGAGCTCCT<br />GCACAGCAAAGAAAATACAAACAGAGTGAACAGACAACCTACAGAATGACAGTATCTGCAAACTATACATCCAACAAAGATCTAATATTCAGCATCTATA<br />AGAAACTTAAACAAATTTCCAAAAACAACCCCATTAAAAAGTGGGCAAAGCATATGAACAGACACTTTTCAAAAGAAGACATACATGCAGCCAACAAACA<br />TGAAAAAGGCTCAACACCACCAATCATTAGAGAAATGCAAATCAAAACCACAATGAGATACCATCTCACACTAGTCAGAATGGCTGATGGCTGTTATTAA<br />AAAGTCAAAAAATAACAGATGCTGGCAAGGTTGTGGAGAAAAGGCAATGCTTATGCACTGTTGGTGGGAGTATAAATTAGTTCAATCATTGTGGTTGACA<br />GTGTGGTGATTCCTCAAAGATCTGAAAACAGAAATATAATTCTACCTAGCAATGCTACTACTGGGTATATACCCAAAGAAAAATAAATTGTTCAATTATA<br />AAGAC

Expression



Full and truncated open reading frames discovered in ENST00000454596

In silico ORF/peptide predictions
>peptide 1 (84 aa)
MTVSANYTSNKDLIFSIYKKLKQISKNNPIKKWAKHMNRHFSKEDIHAANKHEKGSTPPIIREMQIKTTMRYHLTLVRMADGCY

>peptide 2 (72 aa)
MKDLNVKPKTITTIEDNLGNTILDIGTGKNFMTKTPKAIETKAKIEKWVLNKTKELLHSKENTNRVNRQPTE

>peptide 3 (69 aa)
MEPKKSLNSQGNPKQKEQSWKHHATQLQTILQDYSNQNSVVLVQKQTHRPMKQNREPRNGSLFHTPTTI

>peptide 4 (68 aa)
TKPVWWSLHTDAHEIWCHDSDRGTSLGRSIPCLPVLCSVRKIHLQPQVLRPTSPRNISPILNQLQENG

>peptide 5 (59 aa)
MLKIKTGPLPYTVHKNQLKMDERLKCKTQNYNNNRRQPRQYHLGYRNRQKFHDKDTKSN

>peptide 6 (53 aa)
MQCSWIGRINIIKMAILPKAIYRFNAIPIKLPLIFFTKLEKTILKFIWNQKRA


RiboTaper predictions from Ribo-Seq data (HEK293 cell line)
Nothing found.

BLAST search results

Best hit to NONCODE v4:
NONHSAT114930 (Evalue: 0)

Best hit to Swiss-Prot:
sp|O00370|LORF2_HUMAN (Evalue: 4.0E-84)