Detailed information on ENST00000454596

lncRNA-RNA interactions

Number of interactions: 5

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
TCONS_00148698 WD repeat containing planar cell polarity effector novel noncoding ENST00000454596 804 1227 noncoding Trans
TCONS_00148704 WD repeat containing planar cell polarity effector novel protein coding ENST00000454596 804 1227 UTR3 Trans
TCONS_00148705 WD repeat containing planar cell polarity effector novel protein coding ENST00000454596 804 1227 UTR3 Trans
TCONS_00156217 antisense novel protein coding ENST00000454596 888 853 UTR5 Trans
TCONS_00156217 antisense novel protein coding ENST00000454596 968 789 UTR5 Trans

Sequence

>TCONS_00156217 (2304 nt)
ACAAAGCCTGTTTGGTGGTCTCTTCACACGGACGCGCATGAAATTTGGTGCCATGACTCGGATCGGGGGACCTCCCTTGGGAGATCAATCCCCTGTCTTC
CTGTTCTTTGCTCCGTGAGAAAGATCCACCTACAACCTCAGGTCCTCAGACCGACCAGCCCAAGGAACATCTCACCAATTTTAAATCAGCTCCAGGAGAA
TGGGTGACTTGAACTGGCAAGGAGCAACCTGCTCTCTCCACGGGCCTCTGGAACCCCGGCAAGAGAAGATCCCTTGATCACCATGGACACTCAAGTTGGC
AAGAAGAGCTCCTTAGAGAAGTCGTGGGAGGGCAAGCAAGCTGATGTGGAGCCAGGACGATTTGATGTGGGAGCACCTGCAGTGGAGCACAGCCAGGGAG
AGCCATCTCCCCAGGCCTGACTTGCTCCCATAGGAGACTTTAGCCCTAGGGGAACTGTCCATCCTGATCTCTGCAGGGTGGTCTTGTCCATCAGACAGGG
CTGATTCGACCTGAGCACCCCTTGGTCTGCTGGCCTTTCTGGGGTCCCAGCCTGGCCAGACCTGCTTGCAGGGCAGTCTTGGGTGCCCTGGAGGCCACGC
CATAGCTTCTGTGCTGGCAGATAGTATCTGACTGGTGGAGAGCTCCAGCAAGGCTGCCCCTAGGCCACACACCAGCCCATCCACCCCCTCCCCACACTGC
AGCTTCCCTAGGCCCAGGAAACTCCTCACGTGTCTTTGCTGGCACAAGTCTGCACAGGTAGGTTTTGCCTTCCTTGCCCTGCCAGTGCATGGGAGTGTAG
TCTGCCCCCCTGCCCCGTCTGGCTGTCATTGAAGACAGAGCCTTGGTGGGCACAGAGCAAGCCAGCTCCCCCGCAACGCCCACCTCAACACCTGGCCCTT
GTGCTAACACTGTGCAGAGAACAGTGGACCCTGCTCGCACCCTGAGTGATCACTCCTGCTTGTGGGGCACAGAGAAGGTGTCCAGACCTGCTCACGCCAG
TGCCCTGCCCCCAAGCCAACACCACATCCAACAGGAGCCTGCACCCAGTCTTCAGCATAGAGGTGAAAGATCTCTACGAGGAGAACTATGAAACACTGCT
CAAAATAATCAAATATGATACAAGCAAATGGAAGAGCATGCAATGCTCATGGATAGGAAGAATCAATATCATAAAAATGGCCATACTGCCCAAAGCAATT
TATAGATTCAATGCTATTCCTATTAAACTACCATTGATATTCTTCACAAAACTAGAGAAAACTATTTTAAAGTTCATATGGAACCAAAAAAGAGCCTGAA
TAGCCAAGGAAATCCTAAGCAAAAAGAACAAAGCTGGAAGCATCATGCTACCCAACTTCAAACTATACTACAGGACTACAGTAACCAAAACAGCGTGGTA
CTGGTACAAAAACAGACACATAGACCAATGAAACAGAATAGAGAACCCAGAAATGGTTCTCTATTTCACACACCTACAACTATCTGATCTTCGACAAACC
TGATAAAAACAAGCAATAGGGAAATGATTCTGTATTCATTAAATGATGCTGGAATAACTGGCTAGCCATATGCTGAAGATTAAAACTGGACCCCTTCCTT
ATACTGTACACAAAAATCAACTCAAAATGGATGAAAGACTTAAATGTAAAACCCAAAACTATAACAACAATAGAAGACAACCTAGGCAATACCATCTTGG
ATATAGGAACAGGCAAAAATTTCATGACAAAGACACCAAAAGCAATTGAAACAAAAGCAAAAATTGAAAAGTGGGTTCTAAATAAAACTAAAGAGCTCCT
GCACAGCAAAGAAAATACAAACAGAGTGAACAGACAACCTACAGAATGACAGTATCTGCAAACTATACATCCAACAAAGATCTAATATTCAGCATCTATA
AGAAACTTAAACAAATTTCCAAAAACAACCCCATTAAAAAGTGGGCAAAGCATATGAACAGACACTTTTCAAAAGAAGACATACATGCAGCCAACAAACA
TGAAAAAGGCTCAACACCACCAATCATTAGAGAAATGCAAATCAAAACCACAATGAGATACCATCTCACACTAGTCAGAATGGCTGATGGCTGTTATTAA
AAAGTCAAAAAATAACAGATGCTGGCAAGGTTGTGGAGAAAAGGCAATGCTTATGCACTGTTGGTGGGAGTATAAATTAGTTCAATCATTGTGGTTGACA
GTGTGGTGATTCCTCAAAGATCTGAAAACAGAAATATAATTCTACCTAGCAATGCTACTACTGGGTATATACCCAAAGAAAAATAAATTGTTCAATTATA
AAGAC

Expression



Full and truncated open reading frames discovered in TCONS_00156217

In silico ORF/peptide predictions
Nothing found.


RiboTaper predictions from Ribo-Seq data (HEK293 cell line)
Nothing found.

BLAST search results

No hits found.