Detailed information on ENST00000456587

lncRNA-RNA interactions

Number of interactions: 3

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
ENST00000370563 chloride channel accessory 4 protein coding ENST00000456587 668 230 CDS Cis
ENST00000496322 chloride channel accessory 4 processed transcript ENST00000456587 668 230 noncoding Cis
TCONS_00004984 chloride channel accessory 4 novel protein coding ENST00000456587 668 230 CDS Cis

Sequence

>ENST00000456587 (522 nt)
AGCCCTAGCTGCTGTTCCCCATTCGATGCCCCTTTTCAGCCGACCTTGCCAGGGGCAGTCCATGAAAGTTGAATATGATCTCCTTGAAACTTAGCCTCGA<br />GGTCTACAATTTTACCAGGTGAGAACACCTGAGAATGATTACCATTAGGAGGCACTCCTGATACAGTAAACGACCCTCCAGAGAAATTGATTAAGAAAAC<br />TTAGAGAACATAAAATAATAGACCTACCTCTGCAATACCTGGTATTCGAAGACGGGCAGACCGAATATTTAGTTCACCTTCTTGAAAATCTGAGCCAACT<br />GGACTCCAAGTGCCACGAGAACAGAGATTGGGTCTGGTCCCCAGCTTCAGTGCCTCCAAGGCAGAAACTCAAGAGACGTTGTTGAACTGTCAGCCTTTAC<br />ATTTATGCATTACTATTGAAGGCCTGGAATAAATGGATCGTGTTTTACCTGTTATCTTGCTCATCTCTATTACTGCTTCATCAGCAGCTCTTCCCAAAGC<br />AATAAAATGAACAATGGCCCCA

Expression



Full and truncated open reading frames discovered in ENST00000456587

In silico ORF/peptide predictions
Nothing found.


RiboTaper predictions from Ribo-Seq data (HEK293 cell line)
Nothing found.

BLAST search results

Best hit to NONCODE v4:
NONHSAT004271 (Evalue: 0)

Best hit to Swiss-Prot:
sp|P54281|ECLC_BOVIN (Evalue: 5.0E-15)