Detailed information on ENST00000457871

lncRNA-RNA interactions

Number of interactions: 1

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
TCONS_00203663 ribosomal protein L3 pseudogene 6 novel protein coding ENST00000457871 507 197 UTR3 Trans

Sequence

>ENST00000457871 (500 nt)
ATTCACTCCTGCTTCCAGGAGAGCATGATCAAGGAGTGTGGCTGTGCCTACATCTTCTATCCGCGGCCCCAGAACGTGGAGTACTGTGACTACAGAAAGC<br />ACAGTTCCTGGGGCCAGGTGCGGTCGCTCACACCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCAGATCACGAGGTCAGGAGATCGAGACCATCTT<br />GGCTAACACAGAGAAACCCCATCTCTACTAAAAATACGAAAAATTAGCCGGGCGTGGTGGCGGGCGCCTGTAGTCCCAGCTACTCCGGAGGCTGATGCAG<br />GAGAATGGGTACTGCTACTATAAGCTCCAGGTTGACTTCTCCTCAGACCACCTGGGCTGTTTCACCAAGTGCCGGAAGCCATGCAGCGTGACCAGCTACC<br />AGCTCTCTGCTGGTTACTCACGATGGCCCTCGGTGACATCCCAGGAATGGGTCTTCCAGATGCTATCGCGACAGAACAATTACACCGTCAACAACAAGAG

Expression



Full and truncated open reading frames discovered in ENST00000457871

In silico ORF/peptide predictions
>peptide 1 (76 aa)
IHSCFQESMIKECGCAYIFYPRPQNVEYCDYRKHSSWGQVRSLTPVIPALWEAEAGRSRGQEIETILANTEKPHLY

>peptide 2 (68 aa)
MQENGYCYYKLQVDFSSDHLGCFTKCRKPCSVTSYQLSAGYSRWPSVTSQEWVFQMLSRQNNYTVNNK


RiboTaper predictions from Ribo-Seq data (HEK293 cell line)
Nothing found.

BLAST search results

Best hit to NONCODE v4:
NONHSAT026051 (Evalue: 0)

Best hit to Swiss-Prot:
sp|P37088|SCNNA_HUMAN (Evalue: 1.0E-38)