Detailed information on ENST00000460096

lncRNA-RNA interactions

Number of interactions: 33

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
ENST00000263026 eukaryotic elongation factor-2 kinase protein coding ENST00000460096 601 283 UTR3 Trans
ENST00000276431 tumor necrosis factor receptor superfamily, member 10b protein coding ENST00000460096 522 279 UTR3 Trans
ENST00000432564 hydroxycarboxylic acid receptor 1 protein coding ENST00000460096 621 291 UTR3 Trans
ENST00000549365 DNA-damage regulated autophagy modulator 1 nonsense mediated decay ENST00000460096 561 288 CDS_UTR Trans
ENST00000553936 gephyrin nonsense mediated decay ENST00000460096 533 292 CDS_UTR Trans
ENST00000572705 transient receptor potential cation channel, subfamily V, member 1 protein coding ENST00000460096 512 268 UTR3 Trans
ENST00000583694 FYVE, RhoGEF and PH domain containing 4 protein coding ENST00000460096 557 291 UTR5 Trans
TCONS_00027001 programmed cell death 4 (neoplastic transformation inhibitor) novel protein coding ENST00000460096 678 289 UTR3 Trans
TCONS_00027009 programmed cell death 4 (neoplastic transformation inhibitor) novel protein coding ENST00000460096 678 289 UTR3 Trans
TCONS_00065093 UBA domain containing 2 novel protein coding ENST00000460096 605 301 CDS_UTR Trans
TCONS_00065094 UBA domain containing 2 novel protein coding ENST00000460096 605 301 CDS_UTR Trans
TCONS_00065103 UBA domain containing 2 novel protein coding ENST00000460096 605 301 CDS_UTR Trans
TCONS_00089062 eukaryotic elongation factor-2 kinase novel protein coding ENST00000460096 601 283 UTR3 Trans
TCONS_00089065 eukaryotic elongation factor-2 kinase novel protein coding ENST00000460096 601 283 UTR3 Trans
TCONS_00089066 eukaryotic elongation factor-2 kinase novel protein coding ENST00000460096 601 283 UTR3 Trans
TCONS_00103261 Rap guanine nucleotide exchange factor (GEF)-like 1 novel protein coding ENST00000460096 629 291 UTR5 Trans
TCONS_00103262 Rap guanine nucleotide exchange factor (GEF)-like 1 novel protein coding ENST00000460096 629 291 UTR5 Trans
TCONS_00107851 transient receptor potential cation channel, subfamily V, member 1 novel protein coding ENST00000460096 512 268 UTR3 Trans
TCONS_00107851 transient receptor potential cation channel, subfamily V, member 1 novel protein coding ENST00000460096 626 275 UTR5 Trans
TCONS_00107864 transient receptor potential cation channel, subfamily V, member 1 novel protein coding ENST00000460096 626 275 UTR3 Trans
TCONS_00119478 zinc finger and BTB domain containing 7C novel protein coding ENST00000460096 600 292 UTR5 Trans
TCONS_00119512 zinc finger and BTB domain containing 7C novel protein coding ENST00000460096 507 282 UTR3 Trans
TCONS_00124891 zinc finger protein 540 novel protein coding ENST00000460096 618 291 UTR3 Trans
TCONS_00161482 BTB and CNC homology 1, basic leucine zipper transcription factor 1 novel protein coding ENST00000460096 623 290 UTR3 Trans
TCONS_00173729 cms1 ribosomal small subunit homolog (yeast) novel protein coding ENST00000460096 623 291 UTR5 Trans
TCONS_00194652 E74-like factor 2 (ets domain transcription factor) novel protein coding ENST00000460096 621 290 UTR5 Trans
TCONS_00194655 E74-like factor 2 (ets domain transcription factor) novel protein coding ENST00000460096 621 290 UTR5 Trans
TCONS_00203663 ribosomal protein L3 pseudogene 6 novel protein coding ENST00000460096 545 294 UTR3 Trans
TCONS_00203984 family with sequence similarity 169, member A novel protein coding ENST00000460096 627 274 UTR5 Trans
TCONS_00203985 family with sequence similarity 169, member A novel protein coding ENST00000460096 627 274 UTR5 Trans
TCONS_00230128 solute carrier family 26 (anion exchanger), member 5 novel protein coding ENST00000460096 604 292 UTR3 Trans
TCONS_00233718 pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 2 novel protein coding ENST00000460096 608 291 UTR5 Trans
TCONS_00234854 zinc finger and BTB domain containing 10 novel protein coding ENST00000460096 602 287 UTR3 Trans

Sequence

>TCONS_00234854 (628 nt)
CAGAAATGCAGTTTGTGAATGAAGAAGACCTGGAGACCTTAGGAGCAGCAGCGCCACTCTTGCCCATGATCGAGGAGCTCAAACCCCCCTCTGCCAGTGT
AGTCCAGACAGCAAACAAGACGGATTCTCCTTCCAGGAAAAGAGATAAACGAAGCCGACATCTTGGTGCTGACGGCGTCTACTTGGATGACCTCACAGAC
ATGGATCCTGAAGTGGCGGCCCTGTATTTTCCCAAAAAGTAAAATTCCTGTTAATTCCTCACATCATTTCCTATAATCTGAATATCATTCTGTGTGAGAC
CAGTTTCCCCTTATGTTTGATTAGAAAGTGTGCAAGACAGCTGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCTGAGGTGGGCGGATC
ACTTGAGGTCAGGAGTTCAAGACCACCCTGGCCAACATGGTGAATCCTCGTTCTACTGAAAATACCAAAATTGGCTGCACGTGCTGGCATGCACCTGTAA
TCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATTGCTTGAATCCAGGAGGCGGAGGTTGCATTGAGCTGAGATCATGCCACTGCACACCAGCCTGGGCCA
CAGAGTGAGACTCCATCTCAAAAAAAAAA

Expression



Full and truncated open reading frames discovered in TCONS_00234854

In silico ORF/peptide predictions
Nothing found.


RiboTaper predictions from Ribo-Seq data (HEK293 cell line)
Nothing found.

BLAST search results

No hits found.