Detailed information on ENST00000460695

lncRNA-RNA interactions

Number of interactions: 10

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
ENST00000572705 transient receptor potential cation chan... protein coding ENST00000460695 523 271 UTR3 Trans
ENST00000593250 centrosomal protein 76kDa nonsense mediated decay ENST00000460695 550 285 UTR3 Trans
TCONS_00025758 zinc finger, MIZ-type containing 1 novel protein coding ENST00000460695 606 285 UTR5 Trans
TCONS_00025760 zinc finger, MIZ-type containing 1 novel protein coding ENST00000460695 606 285 UTR5 Trans
TCONS_00025761 zinc finger, MIZ-type containing 1 novel protein coding ENST00000460695 606 285 UTR5 Trans
TCONS_00104867 hepatic leukemia factor novel protein coding ENST00000460695 611 286 UTR3 Trans
TCONS_00104871 hepatic leukemia factor novel protein coding ENST00000460695 611 286 UTR3 Trans
TCONS_00107851 transient receptor potential cation chan... novel protein coding ENST00000460695 523 271 UTR3 Trans
TCONS_00135884 zinc finger protein 347 novel protein coding ENST00000460695 529 289 UTR5 Trans
TCONS_00203663 ribosomal protein L3 pseudogene 6 novel protein coding ENST00000460695 562 286 UTR3 Trans

Sequence

>ENST00000460695 (2306 nt)
GGAATATTTTCTGTCTTCAAACACACTGCAGATGCTGCATAACATGAAAGGACAGTTTGCTGAGCATCTTCTTGGAGCTGGATTTGTAAGCAGTAGAAAT<br />CCTAAAGATCCAGAATCTAATATAAATTCAGATAATGAGAAGATAATTAAAGCTGTCATCTGTGCTGGTTTATATCCCAAAGTTGCTAAAATTCGACTAA<br />ATTTGGGTAAAAAAAGAAAAATGTAAGCATTGAAGATTATTATTAATTACTCGTAATTCTCTTCTTAAACTTTTGAAATCTGCTCATGTAACAAGGCTTA<br />TATTATAAATTTGTTCTTATTCATATGTGGGTTATATTCTTGTTCTTTTAATCATTTCAGAGAAGGTGAACTGTTTAGCCATTGGTATCACTTTCCCTCA<br />CAACACATCCTGGAATCACCTCTTTGATAACCCATTATTCACAAAGAATGCTACCACATGATACCAGTGTAAATATTAGAAGAGCCAGCCTGCTAGTAAA<br />TACCAGTGGCTGGATAAAAATTGCTTAGAGTAGATTTTATTTCAGAAACTTTTTTCCTCTTGCCTTATAAATGGATAACTTAGCTCTTTGAATAACATTG<br />TGATTTCACTATTTTGAGAAATAAAGTGTAATAATATATTTACAGGTAGCCTCAGTAGTAATTGGAGACAACAGTGAAGCATGAGCTAGAATGAGCTCAT<br />TCTAGCTAAAGGATACAGAGAAACTAAGAGTCACAAATGGCCAGTAGTGTGGTTGCTGCTATTTTGGAAGACACTCTGTATTAGAATTATGATTGAATCA<br />TTAAAATAGTCAGTGACCCAGTGCATGAGTTTTTAATTTGATAGATGTGTCTTAAGGAAGTAATTTCAAATGTTTTCTAACAGCTATATTGTAAATAATA<br />TAGATTTCTAGTAGCCATGGGAAAATTGTGGTTTTATAATACTGTAATGCATCTCCATAGGTGGGCATTAAAACAGTCATTGTGTAGTAACATGTAAAGT<br />ATTTAAACTGATGTTAAATGAAAGTTGGATATTCTAGAATTATAAACATGAAAAAATAAAGACTTTAAAGATAGGCCAAAGTGCAGACATTGTTCTTGGG<br />CAGTGGTTCTCAACTGGCATGATTTTGCCCCCAAAGGGGACATTGGAAAGTGTCTGGAGATACTTGTGGTTGTCATAACAGTGTGTCAGTAGTACTAAAG<br />TCAAGAAACCCTATTCCAAGGTATAAAGTAATGGGTAGCTGATGAATTTTAATCATTGTGGTTGGATTATTCACATTTTAAGTGACCTAAGTACTTTTTC<br />AAAATAATACTTGGCCAGAAATTTTTTTGTATGTGTGTACCTAACTTTACAGGTAGCTTAACAGTGAGTCACTTTGAAATTCATTTTATTTTCCTCTCTG<br />CCATCCTGGGAGGGCTTTCTGAAAAAATGTAGTTTTCTTTGGACTGGTGCATTGTTTTGGTCCAGACTAGGGGTCAGCAAATTTTGACCTATAGGCCAAA<br />AACTTGTTTTTGTCCTTTTTTTGTTGGAACACAAACATGTTGTTTTCATGTTGTCTATTCTGCTTTCCTTCTACACTAGCAGAGTTGGACAGAAATTATA<br />GAGCCCCAAATATAGACCCTAAAATATTTACTCTCTGGTCCTGTATAGAAATTTGCTGGGCCAGGCACAGTGGCTCACACCTGTAATCCTAGCACTTTGG<br />TTGGCTGAGGCTGTTAGATTACTTGAGCCCAGGAGGTGGAGGTTGCAGTGAGTCAAGATCACACCACTGCACGTTGAGAGATCATGCTACTGCAGTCCAG<br />CCTGGGTGACAGAACGAGACCCTGTCTCAAAAAAAAGAAAAAAGAAATTTGTGAAGTTCTACTGCTCTAGTTATGCAGGGTGGCAGGATGGCATTGGTAA<br />ATTGACTTGAAGTGAGAAAAAATAATTTCTGGTTTTATTCTAAGTATTTAAAACTGTAAATTCATAACCATGATTCATGATTTTGATTACAAGTCTTATG<br />AATTCTTAGAACTTCAGAAGTGGCCGGGTGTGGTGGCTCACACCTGTAATCCTGGCACTTTGGGAGGCCAAGGTAGGCGGACCACCTGAGGTCAGAAGTT<br />TGAGACCAGCCTGGCCATCGTGGTGAAACCCCATCTCTACTAAGAATACAAAAACTAATTGGGTATGGTGGTGGCACATGCCTGTAATCCCAGCTACCCA<br />GGAGGCTGAGGCAGGAGAATCGCCGGAACCCGGGAGGCGGAGGCTGCAGTGAGCTGAGATTGGGCCACTGCACTCCAGTCTGGGTGACAGAGCAAGACTC<br />CGTCTC

Expression



Full and truncated open reading frames discovered in ENST00000460695

In silico ORF/peptide predictions
>peptide 1 (74 aa)
EYFLSSNTLQMLHNMKGQFAEHLLGAGFVSSRNPKDPESNINSDNEKIIKAVICAGLYPKVAKIRLNLGKKRKM


RiboTaper predictions from Ribo-Seq data (HEK293 cell line)
Nothing found.

BLAST search results

Best hit to NONCODE v4:
NONHSAT092805 (Evalue: 0)

Best hit to Swiss-Prot:
sp|Q9H2U1|DHX36_HUMAN (Evalue: 3.0E-36)