Detailed information on ENST00000461448

lncRNA-RNA interactions

Number of interactions: 2

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
ENST00000439138 transmembrane protein 98 protein coding ENST00000461448 503 299 UTR5 Trans
TCONS_00116668 desmoglein 3 novel protein coding ENST00000461448 539 321 UTR3 Trans

Sequence

>TCONS_00116668 (1628 nt)
TTACTAGCTGCAAGCCTCTGCCTGCCTTCCTGCGCGCCGTTCCCCGCTAGTCGCTGCTGCTGGCGCGCACTCGCCGGGTTTTTCCTCCCACGGCCTCGAG
ATGGTGGTGAATGTGGCACGGAGGAGCCGGGCCTTCCAACCCGGTGGGCCCGAGCTCCGAAAGGCCCCCTCGGCAGTGAGAGGGGCGGGAGCCCGCGGGG
GCCGCGCCCTTCTCTCGCTTCGGACTGCGCAACGCTGCGCTCTGGGCTGACAGGCGGATAAAACGGTCCCATCAAGACTGAGAAAAAGCACACCAGCTAT
TGGCACAGCGTGGGCAGTGGGGCCTACAGGATGACTGACTTAGTCTACAGAGATCCCGGCGTACTTAAGCAGATGAAGACTCTTAAGATGACAGAAGGTG
ATTTTTCTGGTGATCGAGGACTTCCGGGGTAATGACAGTGATGAAATGCAGGGGACCTGGTAGGTTTCTTTTGGAGACTAACTGGGGGCTGCCTGGTGGG
ACAGAACAGCATGTTTCCAAGGGCTGTGGCTGGTCATAGCCATGGGATCTCCAACTGCATGCAAGAGCAACCTGGAAAGACTTTGACAGCGCAGGTCAGT
ACAATACCTGCAAGCTGCCACTCAGCTTTCCTATAATGTTTCAGGACCAGGGCTGGAAGCCTTCCATGTGTCAACTTCAATGTAGATGGGTTTTTTTTTT
TTTTTTTTTTTGAGACGGAGTCTTGCTCTGTCACCCAGGCTGCTGGAGTGCAGTGGCATGATCTCGGCTCATGGCAACCTCTGCCTCCTGGGTTCAAGCG
ACTCTCCTACCTCATCCTCCCGAGTAGCTGGGATTACAGGTGCCCACCATCACACCCAGCTAATTTTCTTGTATTTTTAGTAGAGATGGTTTTCACCATG
TTGGCTAGATGGGTCTCGAACTTCTGACCTCGGGTGATCCGCCCGACTCGGCCTCCCCTTCCAAAGTGCTGGGATTACAGGCATGAGCCACCGCTCCTGG
CCAGTTTAGTTTTCACGCTAAGCTTTTTGTTCTGCAGGTTGCCCCCAAGTTTCCTGGCAGTGTGTGATACTGAGGAGGTGAGCTTGTTTCTGGAGCTGTG
CTTTAAGGTAAAGTTGATCAGCTTAATCCTCCTGATCCCTTTCCCATCGGATCTGAACACTGGTCTTGGTGGTCGTAAAAGGAGGAAAAGTAATAGTGAA
GCTGGCCTAAATGTTGTAATCTGGTATATGGCATGTGGGCTAGTTTCAGACAGGTTTCAGAGATGGTTGGATCTCTGAAATTGTAAAATGAAGTATAATC
TTAGGCTAAGGGAAGGATGCGTGTGAAGCTCTGGAGGTTGGTATAGTAATAGCTGACCTATTACTGCATTTGGGAGGGATCTGTCATAGCTTCCTTGCCT
CTTAATTAAGGGTGGTGTTTTTTTCTTTTAGATTCATGTTACATGTAAAGCTGTCCTCATTTGTGACTATGGACCTATGGAGTTGGGACAATCTCTATGG
GAAGCAGAAGGCAAGGACCCCGGTCATTTTAGGTAGAAACAACAGCATGCTAATGCAAAAAATTATGCAGTGTGCTACTGAACTTCAGAGGTGATCAATA
AAAGAAGAATAAAAAGACTAATAAAAGTA

Expression



Full and truncated open reading frames discovered in TCONS_00116668

In silico ORF/peptide predictions
Nothing found.


RiboTaper predictions from Ribo-Seq data (HEK293 cell line)
Nothing found.

BLAST search results

No hits found.