Detailed information on ENST00000461918

lncRNA-RNA interactions

Number of interactions: 3

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
ENST00000441159 family with sequence similarity 115, mem... protein coding ENST00000461918 702 384 UTR3 Trans
TCONS_00225245 family with sequence similarity 115, mem... novel protein coding ENST00000461918 702 384 UTR3 Trans
TCONS_00225248 family with sequence similarity 115, mem... novel protein coding ENST00000461918 702 384 UTR3 Trans

Sequence

>ENST00000461918 (553 nt)
GTGGGACTCTAAACTAGTTCAACCATTGTAGAAGACAGTGTGGTGATTCCTCAAGGATCTAGAACTAGAAATACCATTTGGCCCAGCCATCCCATTACTC<br />GGTATGTACCCAATGGATTATAAATCATGCTGCTATAAAGACACATGCACACATATGTTCATTGCAGCACTATTCACAATAGCAAAGACTTGGAACCAAC<br />CCAAATGTCCATCAATGATAGACTGGATTAAGGAGATGGCACATACCATGGAATACTATGCAGCCATAAAAAGGTTGAGTTCATGTCCTTTGTAGGGACC<br />TGGATGAAGCTGGAAAGCATCATTCTGAGCAAACTATCGCAAGGACAGAAGACCAAACACCGCATGTTCTCACTCATAGGCTCTTGCAGCCAATGCCGGA<br />ACAGGATTTGCTGTTGCTGAGCCTCAAATCGCAATGTTTTGTGGGAAGTTAAATATGCATGTGAACATTCAGACTGGGAAATGGGAACCTGATCCAACAG<br />GCACCAAGAGCTGCTTTGAAACAAAAGAAGAAGTTCTTCAGTACTGTCAGGAG

Expression



Full and truncated open reading frames discovered in ENST00000461918

In silico ORF/peptide predictions
>peptide 1 (63 aa)
MYPMDYKSCCYKDTCTHMFIAALFTIAKTWNQPKCPSMIDWIKEMAHTMEYYAAIKRLSSCPL


RiboTaper predictions from Ribo-Seq data (HEK293 cell line)
Nothing found.

BLAST search results

Best hit to NONCODE v4:
NONHSAT025117 (Evalue: 0)

Best hit to Swiss-Prot:
sp|O00370|LORF2_HUMAN (Evalue: 6.0E-54)