Detailed information on ENST00000462378

lncRNA-RNA interactions

Number of interactions: 1

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
ENST00000560870 sense_intronic sense intronic ENST00000462378 505 253 noncoding Trans

Sequence

>ENST00000560870 (592 nt)
TTTTTTTTTTTTTTTGAGATGGAGTGTCTCTCTGTCGCTCAGGCTGGAGTGTGGAGTACAGTGGCACGATCTCAGCTCACTGCAGCCTCCATCTCCTGGG
TTCAAGCAATTCCCCTGCCTCAGCCTCTCTAGTAGCTGGGATTGCAGGTGCCCACCACCAGAACCAGCTAATTTTTGTAGTTTTAGTAGAGATGAGGTTT
TGCCATGTTGGCCAGGCTGCCCTTGAACTCCTGACTTCAGGTGATCCACCCAGCTCAGCCTCCCAAAGTGCTGGGATTACAGGCATGAGCCACCACGCCC
AGCCGGCCTATTCTGATATGGTGTTTGCCAAATAGCAGCTGGCATCAAAAGCAACTGGTGTGTATGAAGTGGGAGTGTGTTCTGTTTCTAGATTCCTGAT
TCTCCTTCACCTCGTTGAATCAAGTCATGTCTGTTCTTGCTTTTAAGATTTCTTACCGGACCCTTGAACCTCAATGATCCAGATGCAAAATGCAGATTCC
CCAAAATTTTTGTAAATACAGATGACACTTATGAAGAGCTCCATTTAATCGTTTATAAGGCCATGAGTGCGGCTGTGTGCTTTATGATCGACG

Expression



Full and truncated open reading frames discovered in ENST00000560870

In silico ORF/peptide predictions
>peptide 1 (97 aa)
MCGASKFHKGEQASFTNRTNQFFCFCFLFLNGRIDSETALGILVPIRLPFTCAKVGWKCGAAFHGSESLFLGVPAVDEGRYNRYRTVITLRKQVQQR

>peptide 2 (50 aa)
MVQEPGHSWTWSLDQSLPHLVRSPRAVWLWRLKFRIRQGEYHRLRGQRLQ


RiboTaper predictions from Ribo-Seq data (HEK293 cell line)
Nothing found.

BLAST search results

Best hit to NONCODE v4:
NONHSAT046941 (Evalue: 0)