Detailed information on ENST00000462661

lncRNA-RNA interactions

Number of interactions: 17

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
ENST00000375234 AhpC/TSA antioxidant enzyme domain containing 1 protein coding ENST00000462661 525 318 UTR3 Trans
ENST00000446045 AhpC/TSA antioxidant enzyme domain containing 1 protein coding ENST00000462661 525 318 UTR3 Trans
ENST00000524264 SAP30L antisense RNA 1 (head to head) antisense ENST00000462661 510 311 noncoding Trans
TCONS_00059486 signal transducer and activator of transcription 2, 113kDa novel protein coding ENST00000462661 542 311 UTR3 Trans
TCONS_00059487 signal transducer and activator of transcription 2, 113kDa novel protein coding ENST00000462661 542 311 UTR3 Trans
TCONS_00059488 signal transducer and activator of transcription 2, 113kDa novel protein coding ENST00000462661 542 311 UTR3 Trans
TCONS_00059489 signal transducer and activator of transcription 2, 113kDa novel protein coding ENST00000462661 542 311 UTR3 Trans
TCONS_00059491 signal transducer and activator of transcription 2, 113kDa novel protein coding ENST00000462661 542 311 UTR3 Trans
TCONS_00059493 signal transducer and activator of transcription 2, 113kDa novel protein coding ENST00000462661 542 311 UTR3 Trans
TCONS_00059495 signal transducer and activator of transcription 2, 113kDa novel protein coding ENST00000462661 542 311 UTR3 Trans
TCONS_00059497 signal transducer and activator of transcription 2, 113kDa novel protein coding ENST00000462661 542 311 UTR3 Trans
TCONS_00107864 transient receptor potential cation channel, subfamily V, member 1 novel protein coding ENST00000462661 508 299 UTR3 Trans
TCONS_00119961 ring finger protein 152 novel protein coding ENST00000462661 604 310 UTR5 Trans
TCONS_00189916 doublecortin-like kinase 2 novel protein coding ENST00000462661 516 323 UTR3 Trans
TCONS_00189917 doublecortin-like kinase 2 novel protein coding ENST00000462661 516 323 UTR3 Trans
TCONS_00189925 doublecortin-like kinase 2 novel protein coding ENST00000462661 516 323 UTR3 Trans
TCONS_00215909 O-acyl-ADP-ribose deacylase 1 novel protein coding ENST00000462661 551 311 UTR3 Trans

Sequence

>TCONS_00215909 (4963 nt)
AGAGCTGAGAGGACCAGCCATTTTACTTATGGAAAACAGTGTGGCATATTCTGCTGAGCTTCGCCCTGGAAGAAGCCTCTTTTATACATCTCTTCAGGGA
AGAGAGAAGCAATGGGCATGTTAGTATACAATGATCACAGCCACGCAGGCCTGCAAGCTGCCTTTTGGACAGGCTGTTGACTGCCGTTCCAATTAGCTGA
TTGGAGAATGTGGAATGCAGAGTGATAATGCTGCATATCTGCTATCAGGCAGCAGCAAAGGTTTTTGTCTTGGGAAGGCAAGCTTTCCCTGCAATATTAT
CTCAGCAGCTCCCTAGCTGCTTACCCTGAAAACGAGGGATCCAAACGGAGGGTGTTGCACTCTGCTAACGCTGGTCCTGTGCGTGGCTGTGGCATATGAG
CGGCAGGTCTGAAAAAGCAGGTGTGTGCTGGGACGGGCACTGGACTGGAACGCAGGCGGACGCTCTCGGGTTTACCTGCTTCCTGTTAACAGATTGTGGG
CTCCCAGGGCATATGTCTGCACGCTGAGGCCGAGGCGGAGAAGGGGCTTCCTGAGCGTCCCAGTACACTGACAGAGACACTTGGATTGGACTTAATCTTA
AACCTCTGGAGTTCAAGACCTTTTAAAAAGGGCTAAATAAACAATCTCTACATGTAAAAGGCCACTGACTCCTACTTCCTCTGTATAGAGCAACTGTTGA
ACTCAGCTGCCTGTAGGTAAGATTTTTTATTCTGGAATTATTTAATTGTTTTCTGGTATGTTCATAACTAATGTCTTTAAAATAACTTACTTATAGTGAA
AATAATAAGGGGAGTTGTGAACAATTTTCAGGTAAACACGGTGTTCCAGAATACAGCAGGAGCATCTGGGCATTTTTGTGGCTGTAAGTTTTAAACTTTG
CTTAAAGCTCTCATAATAGTGACCTGCAGTACACGCTTGACTATGACTAAGCCATGGATCAGAGGTCTAATTAAGCCTGATTGCCAGAGCAATGAGAGGA
TGTTTCAGACATCATATTTTTGTTGTTTAGACTGCTTTATTTTTAACTTTCCAGGGGCATTAAAAAAAAAAAAAGAGGAAAAAGATGCAACCATCCACCT
GAGTAAAGATAATATATATAAGTAATTGTTCTTTAAGGGCAATGAGCGAGCCGTATTGTATAATGTTCTCCTTTCATCACTGTTTCGTTCATTGCTCGTG
TGGAATTAGAGTGGTTGATTTGGGGGAATCTGGGGGTTTTGTTTTTGTTATTGTTGTTTTGTATGTTCCTAGCACATTTTAGGGGACAGTGTTGAGGATT
CCTTACTAAGCTGACTGTCTTTTGCTGGGTACATCTGCTGGCAGGTTTCTCTAACGTGACAATGTGATACTTCGGGTCAGTTTCTGTGGCTCCCCTCTCC
CCCTCGTTACGCTTGCACTTGACATTTTGCGAAGTACTTTGATCTGTGGACTTTAACTTCAAACACAGCATTTACTTTGATTGTGGCTATTTACTATGCT
CAGTAAAAAGTCTCCTTTTTTTTCCTTTTGGTTTAATGCTTTCATAGCATTTCCTTTAAACAATTTATTGGAGCTTTAGTTTTCCTCACTGATCTGTCTT
AGATTTCACTTCTAGAGGGACCCCCAATTGTAAGAAAAGTGTTCTCTGGTAAAGTTCTCCCCAACACAGACTTCAGGACAGTTCATGGCCCCTGTCTGGC
AGATGTGTAAGAGCAAGCAGCAAATGAGAGTGCACAGAGCCCCGCGCTGGCTGCCCTGCTGCCTCAGAATCTCCGTGTGCCTTGGGGCCCAACTGGTGCT
TTTTAAAAACATGGATGCTGAAATCTTTGGAGTTCAGAAATACTTTTTTTTCAGAAAAGTTTATTGGTATCACAGAGCACATATCAAAGGAAAGCATGCA
TTTTAACCACATAAGGATCGTCTGAGTAACAAAAACGGGAAGAAATAACAAAGAAAAAGAAAATTAGAATCAAAAGAAAACTGGAAAAAAAAAAAAAACC
TTAGTAGCCAGAAGTCTGTTTTACGAGTGAAACTTCTGCTGTGTAAGGGATAAGGGATTTCTTAAAAATGTATTTCCTAAAATGGGCAAAATGTAGCACT
TACTAGCCATTCAATCAGCTTTGGAATATTCTCTTCATTGTGAAGAAAGCACAGGTGTGTGTGACATTTGTTCCCTTCTTCTTTCCCACCCCAAGCACAA
GGTATTTTCACAGTCCTCAGCCAAATACAGAGTTTGACGTTCCCTGGCAAACGGTCCCTGCGTGTTCTGTTGAAGGTTAGGAGTAGAATGAGCCTAATCC
TGTCAGGAGACTGTTTAAGTCCCAGTCAAGGACGCTAGCTCCTCAGCGCTGACGCAGTCTGCCCCGTCCTCTGCACCTTGCTAAGAAGGACAAACGCAAG
TGGCCACAGGACAAATCTCCAAAGGGGCGGAGCTGTGGAGAAAGCTACGGCAGAGATCTCCCTGGATTAGGAGCAGATGCAATCGAATCTCCAGAACTTG
GATTTATAGTAGAAAAACCTAGAGATGTTCAGTCTAATCTTTAAGTTTCCCAAACCTGGGCATTTCATTGCCACTTTTCCCCTTCAAATCTACATTATAA
GAAGCATGTCAATCATCGCATTTATGTGTATGGTTACCATTTTAAATCCTCCCGTTATTTTGAGCCTGGGCTTTGTTGGGGGGATGGGGTGCGTCTAGCT
AGAATACTCACTCTCCCTTAGTACTGGGAAGCCTTGGTCTGCAGGGCTGAGTGCAAATATATTGCTAGAGGTGATAGTCCAGCGGCAAAATTAAATGGCA
CCAGGATGAAATCTTTTTGGAGAATGGTAGGTGATCATTCCATTCCCAGGCAAGCCATTTTCCCCCTGTTTTGTTTTGTTTTTTTTTTCTTTCTGTTTCT
CTTCACCCCTGAATTTTACGTTGAAACTTTGGATTGTTTGAATGTGAAACTTCAGGTGAAAGCTAGCCAAAGCCACCGAGTTTCACCCAGCTTCCACATG
AAAGAAGTATTCTACCCAGCCTTGCACGAAACTTGGCCTGTGTTGCCAAAGGTTTCATGAATGTCAGTGAGCCTGGATTTGAAACATAACCCAAGGCCAG
GTGACTTCTGGTGACTTTGAGGCTTTATTGTATTAGTATAGAATCTGCTGAACAGGGACAGTCCTATTTCCGCATCTTCTACTATAGTTTCATGAGGGCA
CACGTTTTCCCCCAGTAAACTCCCATTTATCTCATGATGTTTGAAAGCCAGGTTCAATCCTAATGTGAATGTTTGTAGCCGTGGGATCGAAGCACTGGCA
GATAGAGGTCTGCGTTTTAAATTCCAGCAGCCTGGCCCTCAGTGGTGTGAACATGTTGGTATAATTCAGCTGAAGGAAGGAAGTCCCGGGAGAGCCGTGG
AATGCCTTTCTTTGCTTAAATATACCTCTGTGCTCGTGAGGAACAAACAGTAACATTTTGTCCAGGTCTATCCGCTTGACAGTATGCCTTTTGTTCCCTC
TCCAAAGGTGGTGTCAAATATATTGGTGGAAAAATAATAAACTTCCAGATATTTTTTTTCCGCCTGCTCAACTGATATACTCCAAGGGAACATTGCAAGC
ATTGAGAAGTTCAGTACTGTGGCTGGGAATGTAAGGTATACTGAGAATAAAGGAGCTCTCAGTGAAGGCAATGTCCCTCAGAAAAGCATGGCGACCCAGA
GTTGATGTGGGTGTGAACGGTCAGATGGTCCCCGGTTGGGAAGGGGTGTGTGTGTGTTTTCTGGGTCGGGGTAGTAGCGAGCAGAGAGGAAAAGGGAGAT
TTGTAAGCTTTGTTCAGCAAATCTGTCACATCGAAAACAAAAATAATCAAGCCCAGGATCTGAAAACATTCCTTTCTTTTGTAGATCATATAAATTTGTG
TTGGCTGAATATTGAATTTTTTTGTATTATTTTTCTCATTAGAGACACCAAGCATTAGGATTCCAGGCATAGTAAATAATCTCCAATGAAAATATGACCC
ATTGGGAAACATAAAATCATTGCAGATAACTCCCATGAGTCAGTCCCAGGAAGGTCCTCATGGTTCTCTGGCAGTTATGAAATGCTAAGCCACCCAGGAC
ACTAAGATCTGACTTGTCCTTTTCTTAGTTGGGAGATTTCTAAACTCATGTGAAGAATTTTCATAAAAATGAATGTGTGGCCTCACTAAAGATTTAGGCT
ATCTTTGGTGAGATACATAGATATAGATTTATTATAAAATTAAATTGCCATCAAATTTCATTTTGAAATTTCATAGTCACTTATATATTCAATAAAACAG
ACTTTCATTAAAGATGTGGTTTGCATTTTAGCAGGTGACATGCAGTGGATGCCCTAGTAGAGAAAGCACTGGAAAAGCTAGCAATAACACAATTTGGAAG
TGCCATATGTAGAAGCTGCTTTTTAGCACTGGCTTCACCAGTCATAGTGTAGCATTTATCAGCATATGTGATTTGATAGCCCCAGACTGGTACAGTGAGC
AGAGGAAAGGAAGATGTTCAAATGGAGGTTCTAGAGAAAATCATTCAGAACCATCCCACAAGGAAGCTCTCACTAACCATATCAAGGTATAAGGAGTTCA
GTAGTTTTAAGACATTCATCATCCATAACAAAACAGAAAAAGGGGAAGGATAGGCTTGGCGTGGTGGCTCACGCCTATAACCCCAGCACGTTGGGAGGCC
GAGGCAGGTGGATCACTTGAGATCAGGAGTTCAAGACCAGCCTGACCAAAATGGTGAAACCCCATCTCTACTAAAAAAAAAAAAAAAATGCAAAATTAGC
CAGGCATGGTGGTGCACACCTATAATCCCAGCTACTTGGGAGGCTGAAGTGGGAGAATAGCTTGAACCTGGGAGGCGGAGGGTGCAGTGAGCCAAGATCC
CACCATTGCACTCCAGCCTGGGCAACAAGAGTGAAACTCTGTCTCAAAAAAAAAAAAAAAAAAA

Expression



Full and truncated open reading frames discovered in TCONS_00215909

In silico ORF/peptide predictions
Nothing found.


RiboTaper predictions from Ribo-Seq data (HEK293 cell line)
Nothing found.

BLAST search results

No hits found.