Detailed information on ENST00000464093

lncRNA-RNA interactions

Number of interactions: 7

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
ENST00000448612 WD repeat domain 27 protein coding ENST00000464093 511 305 CDS Trans
ENST00000494969 colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage) protein coding ENST00000464093 529 298 CDS Trans
ENST00000521027 pleckstrin and Sec7 domain containing 3 protein coding ENST00000464093 556 301 CDS_UTR Trans
TCONS_00189916 doublecortin-like kinase 2 novel protein coding ENST00000464093 574 299 UTR3 Trans
TCONS_00189917 doublecortin-like kinase 2 novel protein coding ENST00000464093 574 299 UTR3 Trans
TCONS_00189925 doublecortin-like kinase 2 novel protein coding ENST00000464093 574 299 UTR3 Trans
TCONS_00219475 WD repeat domain 27 novel protein coding ENST00000464093 511 305 UTR3 Trans

Sequence

>TCONS_00219475 (1631 nt)
CAGAGCCTTTGCCACCATGGGGGAGACCGTAATGAGCGTCAAAATTATCCGAAACCGCCTCACTGGGATCCCAGCTGGCTACTGCTTTGTAGAATTTGCA
GATTTGGCCACAGCTGAGAAGTGTTTGCATAAAATTAATGGGAAACCCCTTCCAGGAGCCACACCTGTAAGGACATTTAGATAATGATGATGTTGCCATT
ATTATTGTCATTGCTTACTACCATCTATTGAATCCCTACTGTATACTTATTTTATTTAATCCTAAAACAACCCTTTACAGTAGGCATTGTTATCTTTGTA
GGCCCAGGAAACTGAAGCTCAGGGAATTGAAATAACTTGTCCAAGGCAACACAGGTAGTAAATGGCAGAGCCAGGATTCAGACTGAAGATTGGTTGCCTC
CCAAATCCATGCCTTTCCATTCTGCATTGCTGCCTCCCATAACCGAAGACTTGAAACTCTAGACCTCTTGCCTGATTGGGAAACTAGAATAGGCTGGCAG
CAGCAAGGACACATTTCAAGAGAGTTGCATTCTGCTCTTCCCACAGTTACTTAGCTTACAGCTGCACCAGCTGGCACACCTGGGCTCATAGAACCATGGA
GCTGGCAGTGCCCTTAGCGGTCATCCGTGCAACCCCCTCATTTTATACAGGAGAAAAAGCTGAGGCTTAGAGAGGGGGAGATGTTTTGGCCAAGGTAATT
TATTTCAGTTTTCTTCAAATATTGTTCAACTCTTGAAACACCTTTCTCTGTTTTAGTTTGTTTGTTTTTCAACTTCCAGGCGAAACGTTTTAAACTGAAC
TATGCCACTTACGGGAAACAACCAGATAACAGCCCTGAGTATTCCCTCTTTGTGGGGGACCTGACCCCGGACGTGGATGATGGCATGCTGTATGAATTCT
TCGTCAAAGTCTACCCCTCCTGTCGGGGAGGCAAGGTGGTTTTGGACCAGACAGGCGTGTCTAAGTAAGGCCTTACTTGTTACTGATGCTTAACTGTGTT
AGTTTCAGCCTTTCTCTCCTGAGTGGAGGTGTTTTAGAAAGGCCCTGCAGCATGGCGATTAAGACCACAAGCTCTGGAGCCAAACTGCCTGGTTCAAATC
CCAGCTCCAATACAGGTGAGGGAGAATGCCAGTATTGTAGAATTGAAGCTCTGTGACCCTTACAGCCCCATCTGTAAAATGGAGCTGATTAATAATAGCT
GCTTGTAGGGTTGATGTAAGGATTAAAGGATATAATATAAGTAAGTCACATTTGAAATGCTTTATAGGTGTTTGCTGTTTTGCTTGTTATTGTTACTGAG
CCTTTCAGTGTAGTTAGAAGTGTTCCACTTCAGGCTGGGCGTGGTGGCTCATGCCTGTAATCCTAACACTTTGAGAGGCCCAGGTGGGTGGATTGCGTGA
GCTTAGGAGTTGGAGACCAGCCCGGGCAACACGGTGAAATGCCGTCTCTATTAAAATACAAAAAATTAGCCGGATGTGGTGGTGTGCACCTGTAGTCCCA
GCTACTTGGGAGGCTGAGGTAGGATAATTGCTTTAACCTGGAAGGCGGAGGTTGCAATGAGCCAAGATTGTGCCACTGCACTCCAGCCTGGGCAACAGAG
CCAGACTCTGTCTCCATAAAAAAAAAAAAAAA

Expression



Full and truncated open reading frames discovered in TCONS_00219475

In silico ORF/peptide predictions
Nothing found.


RiboTaper predictions from Ribo-Seq data (HEK293 cell line)
Nothing found.

BLAST search results

No hits found.