Detailed information on ENST00000464883

lncRNA-RNA interactions

Number of interactions: 29

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
ENST00000075120 solute carrier family 2 (facilitated glucose transporter), member 3 protein coding ENST00000464883 548 287 UTR3 Trans
ENST00000217185 protein tyrosine kinase 6 protein coding ENST00000464883 535 289 UTR3 Trans
ENST00000336787 RAB27A, member RAS oncogene family protein coding ENST00000464883 517 313 UTR3 Trans
ENST00000378004 Rho GTPase activating protein 26 protein coding ENST00000464883 561 307 UTR3 Trans
ENST00000379565 ribosomal protein S6 kinase, 90kDa, polypeptide 3 protein coding ENST00000464883 509 313 UTR3 Trans
ENST00000396307 RAB27A, member RAS oncogene family protein coding ENST00000464883 517 313 UTR3 Trans
ENST00000424496 sense_intronic sense intronic ENST00000464883 567 288 noncoding Trans
ENST00000482603 glyoxylate reductase/hydroxypyruvate reductase processed transcript ENST00000464883 525 288 noncoding Trans
ENST00000484457 F-box and leucine-rich repeat protein 2 protein coding ENST00000464883 563 307 UTR3 Trans
ENST00000547865 spermatogenesis associated, serine-rich 2 protein coding ENST00000464883 522 310 UTR3 Trans
TCONS_00010077 Ras association (RalGDS/AF-6) domain family member 5 novel protein coding ENST00000464883 557 283 UTR3 Trans
TCONS_00021902 protein tyrosine phosphatase, non-receptor type 14 novel protein coding ENST00000464883 506 254 UTR3 Trans
TCONS_00021903 protein tyrosine phosphatase, non-receptor type 14 novel protein coding ENST00000464883 506 254 UTR3 Trans
TCONS_00030588 cytoplasmic polyadenylation element binding protein 3 novel protein coding ENST00000464883 595 286 UTR3 Trans
TCONS_00075834 forkhead box N3 novel protein coding ENST00000464883 622 292 UTR3 Trans
TCONS_00075835 forkhead box N3 novel protein coding ENST00000464883 622 292 UTR3 Trans
TCONS_00082423 transcribed_processed_pseudogene novel protein coding ENST00000464883 623 292 UTR3 Trans
TCONS_00116668 desmoglein 3 novel protein coding ENST00000464883 582 293 UTR3 Trans
TCONS_00148484 EGF containing fibulin-like extracellular matrix protein 1 novel protein coding ENST00000464883 606 307 UTR3 Trans
TCONS_00150696 septin 10 novel protein coding ENST00000464883 632 322 UTR3 Trans
TCONS_00152102 cordon-bleu WH2 repeat protein-like 1 novel protein coding ENST00000464883 582 308 UTR3 Trans
TCONS_00152103 cordon-bleu WH2 repeat protein-like 1 novel protein coding ENST00000464883 582 308 UTR3 Trans
TCONS_00152105 cordon-bleu WH2 repeat protein-like 1 novel protein coding ENST00000464883 582 308 UTR3 Trans
TCONS_00152107 cordon-bleu WH2 repeat protein-like 1 novel protein coding ENST00000464883 582 308 UTR3 Trans
TCONS_00194682 E74-like factor 2 (ets domain transcription factor) novel protein coding ENST00000464883 606 308 UTR3 Trans
TCONS_00194686 E74-like factor 2 (ets domain transcription factor) novel protein coding ENST00000464883 606 308 UTR3 Trans
TCONS_00222403 protein tyrosine phosphatase, non-receptor type 12 novel protein coding ENST00000464883 645 294 UTR5 Trans
TCONS_00235906 zinc fingers and homeoboxes 2 novel protein coding ENST00000464883 514 304 UTR3 Trans
TCONS_00253752 queuine tRNA-ribosyltransferase 1 pseudogene 1 novel protein coding ENST00000464883 535 275 UTR3 Trans

Sequence

>TCONS_00253752 (3059 nt)
TGACAGCATCACCTGTGGGTTCAGAATCAGAGACCTCCAGCTTCTGTCCCCATTTTGGGGTAATTGGATGGCTGTATTCATAGAGCAGCCGGCCCCTGTT
TGCTAGCTGAATGTCGTAACCTGAATGGCTGTGATACTGGACATGCAAAAATCACATGTGGCTATGACCTTCCTGCAAAATCTCCTGGTAACCACAATTC
TTTCTGGAGTGCAATGGCATAATCTCAGCTCACTGCAGCCTCTGCCTCCTGGGCTCAAGTAATTCTCCTGCCTCAGCCTCGTGAGTAGCTGGGACTACAG
GTGTATGCCACCACTCCCCGCTAATTTTTGTATTTTTAGTAGAGACGGGATTAGAACATGTTGCCAAGGCTGGTCTGGAACTCTTAGGCTCAAGCAATCC
TCCTGCCTTGGCTTCCCAAAGTGCTGGGATTAGAGTTTTGAGCCACCACGCCCAGCCCATGATTCTACTTTCTGTTTGTATGAGTTTGATTACTTTAGAT
ACCATTTATGAGGGGAATTATACAATAGTTACCTTTTGTGACTGGCTTATTTCTCTTAGCATAATGTCTTCAAGGTTTAGCCATATTATAGAGTGTGATA
GGAATTCTTCTTTTTTAAGGCTGAATAATATATCTCTTTGTATGTATATACCACATATTGTTTATCCATTTATCTTTTGATGAACATTTGGGTTACTTCC
ACCCCTTGGTTCTTGTGAATAATGCTGTAGTGAACATGGATGTGCAGATATCTCTTGGAGACCCTGCTATCAATTCTTTTCATTATACGCCCAGAAGTGG
AATTGCTGGGTCATATGGTGATTCCATGTTTAATTTTTTTGAGGAAATTTAATACTGTTTTTGATAGTGGCTAACACTATTTTACATTCCCAATAACAAT
GTACATCTTCACTAACACTTGTTACTTTCCGTTTTTTGATAATAGCCATCCTAATGAATGTGATATGCATACACGGCTTTAAAAAAACTTGTTTCTTCAG
AATATTTGCATATGGAGATTAGCATATATTATTTACCTTTAATATTATATATTTTGTCCTTGCTTATTTGATAGATAAAAAATAATTTGTATTTATTTGA
CTACTAGTAAAATTTAATATTTTTAATACTTGGTTACTAGCCAGTTTATATTTTTCTTTTGTGATTTGTAAGTTCATAATCTATACCTCATTTTGTATTG
GGTTTTCTCCACCCTTCTTATTTATTTATAAGAGCTATTAATATAATACATTATCCTTTTATCTTTTATTTATTTATTTTTAAGACAGAGCCTCGCTCTG
TTGCCCAGGCTGGAATGCAGTGGCACAAACACAGCTCTCTATAGCCTTGACCTCCTGGACTCAAGCAATCCTCTTGCCTCAGCCTCCCAAGTAGCTGGTA
CCACAGGCTTGTACCACCATTTCTGGCAAATTATTAAATTTTTATGTAGAGATAGGGACTCACCATCTCGCCCAGGCTGGTCTCAAACTCCTCAGCTCAA
GCAATCCTCTTGCCTTGACTTCCTAAAGTGCTGAGGTTACAAGCATGAGCCACCATGTCTGGCTGTTATTTCATGTTTTTTTACAAACATTATTTTCATG
TTTCAGATACATTTCAACTTTGTTTATTGCAATTTTTGCTTCTATAATACTGATAGAATCAAACTGAAACTTAAGACTATTTTATTTCTCATTTACCCCT
ACTTTTTTTTTGTTTGTTTTGTTTTTTGAGATGGAGTCTCACTCTGCCGCCCAGGCTGGAGTGCAGTGACGTGATCTCGGCTCACTGCAAGCTCTGCCTC
CTGGGTTCACACCATTCTCCTGCCTCAGCCTCCCGAGTAGCTAGGACTACAGGTGCCCACCACCACGTCCGGCTAATGTTTTTATATTTTTAGTAGAGAT
GGGGTTTCACCATGTTAGCCAGGATGGTCTCGATCTCATGATCCACCCGCCTCAGCCTCCCAAAGTGCTGGGATTACAGGCATGAGCCACTGTGCCTGGC
TTTTACCTCTACTTTTATATGAAGAAAATCCATGCTCATGTAATAGCCAAATACAGTCAAATTCATTTTTCTCTAGTGTTAATATTTCAGTCAAATTCTA
ATGCATTAGGAATTTGTTAATATTGCATTTAATATTATTTTTCCCCAATCTTTTTTTATTTGAAAAATATTATAATCCAGTCAAATAGCAAATAACATAA
CAAAATGAGAATTTCTTACCAAGGATTAATTCATATTAACATTTTATCATATTGATTTCAGATCTTGTGTGTGTGTGATGTTTACTGATAAATTTTGTGT
CCTTGTACAGCTTTTGTGGATCAGGGACAAGGGGAGCATGTTGCCGAACAAAAATATATTAACATGTTTGGGACTAATGCACACTGATTTTCACAGAAAG
TAACTGATTGATTGCAATCAAGTATGGGAGACTAGAGGGTGGCAAGAGTTTTGATAAAATTCAGTTCAATAAACTTGTGAATTTAAGAGCATAGAGATTC
TATTAACGAGAATGAATAGAAGAAGATTTAGACATGGTGATTTAAAGGGGATATCAAGTTAGTGTTGAAGAGTAACCATCTCAGGAAAACAGTAGGAATT
AGAGCCAGTTCTGAGAATATTCTGTGTGAGATCTATGGAAATAAAAAAGCTAGGAAGGGAAAAGCTTAAAGGAATGTGTGTTGGGAAGTGCTTATAGAAG
AGAGCAAGCAAAGTGCCTTCCTGTTGTCGTTTAGACTTTTCCTTAATCTGCATTCCTGCAGTTAGGTTTACTGAGCTCTATGGCCTGAGTTATTGCTCTT
CTATGTAGTTCCAGATTAAGGGTTAAGAATTCTAGTAGAGCAGGAGTATTTCTGGAAAAGATGGTTGGGGGGCAAGTATAGGGATGGGGAGAAGCGGAGG
GCTTACTCTCCACCTCCCAAAATTTTCATGGAAATGACATTCAGTAAAAGTAAATATCCATATAACAATGGTGGTGGAAAGGAAAATGTAGGGGTAGATG
GCTTTTGCGGATCAGGAACAAAGGGTATCATAATGCTAAATAAAAATATGTTAACATGTA

Expression



Full and truncated open reading frames discovered in TCONS_00253752

In silico ORF/peptide predictions
Nothing found.


RiboTaper predictions from Ribo-Seq data (HEK293 cell line)
Nothing found.

BLAST search results

No hits found.