Detailed information on ENST00000465340

lncRNA-RNA interactions

Number of interactions: 5

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
ENST00000450928 antisense antisense ENST00000465340 503 273 noncoding Trans
ENST00000473091 UBA domain containing 2 processed transcript ENST00000465340 530 276 noncoding Trans
ENST00000593250 centrosomal protein 76kDa nonsense mediated decay ENST00000465340 510 265 UTR3 Trans
TCONS_00030130 calcium/calmodulin-dependent protein kinase II gamma novel protein coding ENST00000465340 605 257 UTR3 Trans
TCONS_00067572 DCN1, defective in cullin neddylation 1, domain containing 2 novel protein coding ENST00000465340 614 278 UTR3 Trans

Sequence

>TCONS_00067572 (2239 nt)
CTTTCTTTCCGCGCCGATAGCGCTCACGCAAGCATGGTTAACGTCCCTAAAACCCGCCGGACTTTCTGTAAGAAGTGTGGCAAGCACCAACCCCATAAAG
TGACACAGTACAAGAAGGGCAAGGATTCTCTGTACGCCCAGGGAAAGCGGCGTTATGACAGGAAGCAGAGTGGCTATGGTGGGCAAACTAAGCCGATTTT
CCGGAAAAAGGTGAGTGGTAGTTACTATTTGACGTTTCCCAGTTAATTGCCGTAAGGATATGCACTTGTCTCTAGTCCACACACTTCATGATATAGGTAT
AGCGTTAGTTTAGCGAAGTTTTCACTGCACTGATATATCTAGTAGGTGATGGAGCTGGGAATGCAACTCATGTCTGACTAGTCCACAATACTGCACTATT
TCAGTGTTTACGATTTTTTATCCTTTCCCTTCTGAAGAGGCAAAAAATTGAGGAATGTGCCCTGCTTTCCTAAGAACTGAAGTGTGAGTACACTGGTAAA
TCCTTTCATTTGCCTTGTTCCTTATCTGTCAATATGTCTGAATCCTCGCTTGTTGGTTGCACTAAGAATTGTTCTGTTGTTTCTCATCACAGAAATCTGC
AGTCAACTACCTGTTCTCGTGAAGTCTTAAAACTCTTATAGAATAGCCATTTAGGCCTTTCTGCTAGCCTCCTGAATTCTGTATTCTCAGGCTGAGCGAG
TTTCTGTTTACTCTCAAACCTTAGGTGATTTGGCTAACTCTTAAAGTAATTAGCACGATGATTGGAACGGAGCATTCTCTCCAACACAGCATTTCTTTTG
GCACTTTGCTTCTTGTGCAGTTTAGCTCCAGAAAGTATTAAGGAATGACTTTAGTGCTCATTTGGATGCAGTAAGTGGTTTGATCTCAGGGTGGCAAAAA
GAATGCTTTTTTTATACCTTTTCACATTCGGATAACTTGTTTAGAAGACAGAGGTTCTAACTAGGTTTTGGCCTATTAAGAACTGCAAACTAGCAGCAGC
AGAACTCTGGCTAAAGGGGCAAGCTTATTAGGAAATTGAGTATTTAAAAGTTGAGCTACCATATGATCCAACAATCCCACTGCTGGGTATATACCCAGAA
GAAAATCGGTATATCAAAGAGATATCTGCACTCCTATGTTTGTTGTAGCACTGTTTATAATAGCTAAGATTTAGAAGCAACCTTAGTGTCCATCGGGATG
AATGGATAAAGAAAATGTACCTATACGCGGCCAGGCACGGTGGCTTGTGCCTAGCACTTTGGAAAGCCGAGGCGGGTGGATCACCTGAGGTCAGGAGTTC
GAGACCAGCCTGGCCAAGATAGTGAAACCCCGTCTCTAGTAAAAATACAAAAATTAGCCGGGCTTGTGGTGTGGGCCTGTAATCTCAGCCACCCGGGAGG
CTGAGGCAGGAGAATCGCTGGAACCTGGGAGGCAGAGGCTGCAGTGAGCCGAGATCACGCCACTGTACTCCAGCCTGGGCGACAGAGCAAGACTCCATCT
CAAAAAAAAAAAAAAAAAAAAGGGAAAAAGAAAATGCACCTATACACAGTGGTACTATTCAGCCATAAAAAGAATGAGATCCAGTCATTTACAACAACAT
GGGTGGAACTGGAGATCGTTATGTTAAGTGAAATAGGCACACAAAGACAAGCATCACATGTTCTTGTTTGTGGGATCTAAAAATCAAAACAAGTGGACTT
GTCATATAGAGAGTAGAAGGATGGTTACCAGAAGCTGAGAACTTCTGGTGGCGGGAGGTGGGGATGGTTAATGGGTACAAAAAGAAAAAAGAATGAATTA
GACCAACTATTTGATAGCACGACAGCGTGACTAAAGTCAATAACTTAGTTACATATTTTAAAATAACTTAGAGTGTAATTGGATTGTTTGTACCTCAAAG
AAAAAATGCAATAAAACTTTACAGTGGAGAAACCTAACAAGCACTACCTCAGCCAGGTAATCAAGGTTAACATCAACAGTCACGAGTCATGTTGATATAT
ACCCTTGATAAGGTGTGATGAAAATGACACTTAAACCTAAAAATCCATAACCCTATCTAATGAGAAAAATAACAAATCCCAAGAGGGGCATTTTACAAAA
TACTTGACCAGTAGTGCGGAAATTGTCAAGGTCATCAAAAAAGTCTGAGAAATTGCCACAGCCAAAGGAGTCTAGAGACATGATGACTAAATGTTAGGTG
GTGTCCTGCGTGGGGTCCTAGAACAGAAAAAGGACATTAG

Expression



Full and truncated open reading frames discovered in TCONS_00067572

In silico ORF/peptide predictions
Nothing found.


RiboTaper predictions from Ribo-Seq data (HEK293 cell line)
Nothing found.

BLAST search results

No hits found.