Detailed information on ENST00000465957

lncRNA-RNA interactions

Number of interactions: 1

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
ENST00000512143 platelet-derived growth factor receptor,... protein coding ENST00000465957 559 272 CDS_UTR Trans

Sequence

>ENST00000465957 (922 nt)
CCGGGCTCCTGCAGGCGGGGCGCTGTGCGCGCCGCGATCCGGTACGTGGGCCTCCGGGCTGTCCCCTCTGGGGGCGGCGATCCTCCCTCCGGAGCCCCCC<br />TTCAACCCTCCCGGAAGTGAGCATTTGCAGGACCAGGGATGCTGTGCTGCTCTCCCATGAGCCAGTCACCGAGTCGGTCTGCTGCAGCCCTTTCTGAACC<br />TCTGGCCGTCTGGATGCTCCACTGTGCTTGCCAAGATGAAGTGCGTCTTGGTGGCCACTGAGGGCGCAGAGGTCCTCTTCTACTGGACAGATCAGGAGTT<br />TGAAGAGAGTCTCCGGCTGAAGTTCGGGCAGTCAGAGAATGAGGAAGAAGAGGTTGGCCTCTTGATGCTCTGAGCTCGGTGACCCCACCCCCACACCCCA<br />CCAGTCCTCTCTGGACTAAATGAGGGCAAGAAGAAGTCGAATTTTATCACGTAACAGAAGAACTTGGAGCCATCAGTTTCTGTAACCTAAAAAGTTTAAC<br />AAGGCTGGGCGCGGTGGCTCACGCCTGTAATCACAACACTTTGGGAAGCCAAGGTGGGCCAGTTGCTTGAGCTCAGGGATTTGAGACCAGCCTGGGCAGC<br />ATGGCGAAACCCTGTCTCTACAAAAAAAATACAAAAATTAGCCAGGTGTGGTGGTGCGTGCCTATAGTCCCAGCTACTTGGGAGGTTGAGGTGGGAGGAT<br />CACTTGAGTCCAGGTGGTAGAGGCTGCAGTGAGCCGAGACTGTGCCCATGCATTCCAACCTGGGCGACAGAGCAAAAAAAAAAAAAAAAAGTTTAACGTA<br />AGCTGAACACGTTAATTTTTTAATAGCTGTATTAAGGTATGATTAACATACCATAAATTGCACATATTTAAAGTGCATAATTTGATAAGCTTTGATATGT<br />ATATACCTATGATTCTATCACA

Expression



Full and truncated open reading frames discovered in ENST00000465957

In silico ORF/peptide predictions
>peptide 1 (64 aa)
GLLQAGRCARRDPVRGPPGCPLWGRRSSLRSPPSTLPEVSICRTRDAVLLSHEPVTESVCCSPF

>peptide 2 (52 aa)
RAPAGGALCAPRSGTWASGLSPLGAAILPPEPPFNPPGSEHLQDQGCCAALP


RiboTaper predictions from Ribo-Seq data (HEK293 cell line)
Nothing found.

BLAST search results

Best hit to NONCODE v4:
NONHSAT015902 (Evalue: 0)

Best hit to Swiss-Prot:
sp|Q92902|HPS1_HUMAN (Evalue: 2.0E-16)