Detailed information on ENST00000466430

lncRNA-RNA interactions

Number of interactions: 47

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
ENST00000227155 CD82 molecule protein coding ENST00000466430 616 278 UTR3 Trans
ENST00000424496 sense_intronic sense intronic ENST00000466430 628 275 noncoding Trans
ENST00000607772 CNKSR family member 3 protein coding ENST00000466430 617 281 UTR3 Trans
TCONS_00001594 lincRNA novel protein coding ENST00000466430 656 277 UTR5 Trans
TCONS_00030130 calcium/calmodulin-dependent protein kinase II gamma novel protein coding ENST00000466430 654 274 UTR3 Trans
TCONS_00034642 CD82 molecule novel protein coding ENST00000466430 616 278 UTR3 Trans
TCONS_00034643 CD82 molecule novel protein coding ENST00000466430 616 278 UTR3 Trans
TCONS_00050741 spermatogenesis associated, serine-rich 2 novel protein coding ENST00000466430 646 293 UTR3 Trans
TCONS_00050741 spermatogenesis associated, serine-rich 2 novel protein coding ENST00000466430 636 288 UTR3 Trans
TCONS_00067572 DCN1, defective in cullin neddylation 1, domain containing 2 novel protein coding ENST00000466430 656 294 UTR3 Trans
TCONS_00075917 ribosomal protein S6 kinase, 90kDa, polypeptide 5 novel noncoding ENST00000466430 624 291 noncoding Trans
TCONS_00082423 transcribed_processed_pseudogene novel protein coding ENST00000466430 600 274 UTR3 Trans
TCONS_00090939 nucleoporin 93kDa novel protein coding ENST00000466430 623 299 UTR5 Trans
TCONS_00095053 epithelial membrane protein 2 novel protein coding ENST00000466430 557 274 UTR3 Trans
TCONS_00095053 epithelial membrane protein 2 novel protein coding ENST00000466430 615 259 UTR3 Trans
TCONS_00108999 trans-golgi network vesicle protein 23 homolog C (S. cerevisiae) novel protein coding ENST00000466430 697 293 UTR5 Trans
TCONS_00109000 trans-golgi network vesicle protein 23 homolog C (S. cerevisiae) novel protein coding ENST00000466430 697 293 UTR5 Trans
TCONS_00109009 trans-golgi network vesicle protein 23 homolog C (S. cerevisiae) novel protein coding ENST00000466430 697 293 UTR5 Trans
TCONS_00109011 trans-golgi network vesicle protein 23 homolog C (S. cerevisiae) novel protein coding ENST00000466430 697 293 UTR5 Trans
TCONS_00109012 trans-golgi network vesicle protein 23 homolog C (S. cerevisiae) novel protein coding ENST00000466430 697 293 UTR5 Trans
TCONS_00109013 trans-golgi network vesicle protein 23 homolog C (S. cerevisiae) novel protein coding ENST00000466430 697 293 UTR5 Trans
TCONS_00109014 trans-golgi network vesicle protein 23 homolog C (S. cerevisiae) novel protein coding ENST00000466430 697 293 UTR5 Trans
TCONS_00109427 serine hydroxymethyltransferase 1 (soluble) novel protein coding ENST00000466430 615 274 UTR3 Trans
TCONS_00119049 GRB2 associated, regulator of MAPK1 novel protein coding ENST00000466430 680 294 UTR3 Trans
TCONS_00147100 ATPase family, AAA domain containing 2B novel protein coding ENST00000466430 613 294 UTR3 Trans
TCONS_00147113 ATPase family, AAA domain containing 2B novel protein coding ENST00000466430 613 294 UTR3 Trans
TCONS_00147115 ATPase family, AAA domain containing 2B novel protein coding ENST00000466430 613 294 UTR3 Trans
TCONS_00150696 septin 10 novel protein coding ENST00000466430 651 275 UTR3 Trans
TCONS_00165085 SPECC1L-ADORA2A readthrough (NMD candidate) novel protein coding ENST00000466430 605 275 UTR3 Trans
TCONS_00165089 SPECC1L-ADORA2A readthrough (NMD candidate) novel protein coding ENST00000466430 605 275 UTR3 Trans
TCONS_00165090 SPECC1L-ADORA2A readthrough (NMD candidate) novel protein coding ENST00000466430 605 275 UTR3 Trans
TCONS_00184373 neutral cholesterol ester hydrolase 1 novel protein coding ENST00000466430 675 274 UTR3 Trans
TCONS_00186316 KIAA0232 novel protein coding ENST00000466430 605 266 UTR5 Trans
TCONS_00186316 KIAA0232 novel protein coding ENST00000466430 619 298 UTR3 Trans
TCONS_00190999 zinc finger protein 721 novel protein coding ENST00000466430 618 276 UTR3 Trans
TCONS_00194655 E74-like factor 2 (ets domain transcription factor) novel protein coding ENST00000466430 603 262 UTR3 Trans
TCONS_00194682 E74-like factor 2 (ets domain transcription factor) novel protein coding ENST00000466430 630 275 UTR3 Trans
TCONS_00194686 E74-like factor 2 (ets domain transcription factor) novel protein coding ENST00000466430 630 275 UTR3 Trans
TCONS_00205414 prolyl 4-hydroxylase, alpha polypeptide II novel protein coding ENST00000466430 652 288 UTR3 Trans
TCONS_00222403 protein tyrosine phosphatase, non-receptor type 12 novel protein coding ENST00000466430 638 281 UTR5 Trans
TCONS_00226753 cell division cycle associated 7-like novel protein coding ENST00000466430 635 297 UTR3 Trans
TCONS_00235685 oxidation resistance 1 novel protein coding ENST00000466430 622 293 UTR3 Trans
TCONS_00235708 oxidation resistance 1 novel protein coding ENST00000466430 635 277 UTR3 Trans
TCONS_00245543 long intergenic non-protein coding RNA 963 novel protein coding ENST00000466430 608 293 UTR3 Trans
TCONS_00247576 contactin associated protein-like 3 novel protein coding ENST00000466430 601 281 UTR3 Trans
TCONS_00247594 contactin associated protein-like 3 novel protein coding ENST00000466430 601 281 UTR3 Trans
TCONS_00253752 queuine tRNA-ribosyltransferase 1 pseudogene 1 novel protein coding ENST00000466430 642 274 UTR3 Trans

Sequence

>TCONS_00253752 (2747 nt)
CTGATCCATATGAATTCCTCTTATTAAGAAAAATAAAGCATCCAGGATTCAATGAAGAACTGACTATCACCTTGTTAATCATTCAGAAACATGTTGCAGG
CTTAAGCCATTTTTGATATAGATACTGAAACAATTACTTGCTAAGAGCAAACTTGAAGTAACAATTTGGACAAGACAGCAAATGCTATTGTCCAAGTTTT
CTAAAGAAGAATCTGAAGTGAAATGACATCAAGAGACCTATCAAGACCTGTATCCAGGAAAAGACCAAACCAATGCAGACCAAACCAATGCAGAACTCCT
ATGTGCTGATGGTGGTCTTACATTTCCCTAAGTTTCTGCCGACTAAACTGTGCACACGTTCTCAGGACCTCCTGAAGCTGCGTCACAGGCACTAATCAAA
GAACACAACCAAGAGTTTGGCCTTTTCTTCAGCACTGGGAATTGTGATCCAAAGCTTTTCCCGATGAAGCACAAAGTTGGAGAAAAAAAAACGCAAACTA
AACAACCACAATGAAACAGAACAGAGTTAATCTGCTGTAGCTCAAGAGAGGATGTACCTGCCCCCACCCCGCATCCCTGGGCTCGGGTTTGCCTTGCTGA
CCTCTGCTGCCACCTGGTGCCACACAGAGAAACTGAGGAGAAACCACATCAGTCTCCTTCAGCCTCAGCTTCACATCTGTGGGTCAAGCAACCCTTTCAG
AAGCTGTATAATGTGGGAAAGCTTTCCTCTCAGGAAAATGCACACATCCAACTTTGAGAAGATGCCCTTGGGGGCGCTTCAAGGATTCTAGATAATAACC
CCCTTTCCCGAACATCCAAGAACCTAAGATTTTTTTTTTTTTGAGAAAGTCTCGCTCTCTCTCCCAGTCTGGAGTGCAGTGGCGTGATCTTGGCTCACTG
CCAGCTCCACCTCCCAGGTTCACGCCATTCTCCTGCTTCAGCCTCCCAAGTAGCTGGGGCTACAGGCACCTGCCACCAAACCCGGCTAATTTTTTTGTAT
TTTTAGTAGAGACGGGGTTTCACCGTGTTAGCCAGGATCGTCTTGATCTCCTGACCTTGTGATCCACCCGCCTCGGCCTCCCAAATTGCTGGGATTACAG
ATGTGAGCCACCGCACCTGGTCCAAGAACCCAAGTTTTAGATCTAGAGTGATGTCAGCATGACATTGATTTCCTGAGGCCCAGGGGCGAAGGAGCTGAGG
ACAGCAGAGGGGTGAAGGAACTCAGCTACAGACAGCAGCAGCTGATGCACAGGCCTCCCAGCGCCTGAAGTCACCCGGAATTGGGAAGTGCTCAGAAGCT
TACAAAGCTGCCTCGAGGTGGGAACATGACATAAATCCAAGAGCAGATCCCTGATCCTATAAAAATGTACTAGATGCAGTGGGGGCATTTTAAATGAGCA
GAGAAGGACAGACAGATAAACAGAAGGACAAACAGTATTGGGATTGGGATAAATGCTCAGCTTTTGCCCAAATCTTAGTGACTTAAGCATCACTTATTTG
CTCACGATTCTGTGGCTGGACCATTTGGTTTGGCTCACAGGGCAGGGACTGTGCTGGTCTTACCTGAGCAGACCTGCATGTCTGCGGTCAACTGGGTTGG
CAGAGACAGAGTGACTGTCTTCCTCCAGGAAGCAGCAGGTTAACTGGTTGGCAGAGACAGAGGGACAGAGGGACTGTCTTCCTCCAGGAAGCAGCAGGTT
AACTGGTTGGCAGAGACAGAGGGACAGAGGGACTGTCTTCCTCCAGGAAGCAGCAGGTTAACTGGTTGGCAGAGACAGAGGGACTGAGGGACTGTCTTCC
TCCATGAAGCAGCAGGTTAACTGGTTGGCAGAGACAGAGGGACTGAGGGACTGTCTTCCTCCAGGAAGCAGCAGGTTAACTGGTTGGCAGAGACAGAGGG
ACTGAGGGACTGTCTTCCTCCAGGAAGCAGCAGGTTAACTGATTGGCAGAGACAGAGGGACTGAGGGACTGTCTCCCCCCAGGAAGCAGCAGGTTGGCTC
TGTTTCCTTCGTGGGGCAGCTGGTCTCCAGGGCAGCAAGAGAGACCAAGCCCCAGTGCACATTCTACAGCCTCTGTGCACATCAGACTTGTTAATATCCC
ATTGGCCAGTGTAAGTCACTTGGCCAAGCCCAGATTAAGGAGTGGAAAGATGGAGGCTATCTCCTCCTGGGAGAGGAGGCAAAGGAGGTGGGAGTATTAT
GTGGCCACTTATGTTTGCAATCTACCATACTTAGCACTTTGAGAAAAGAATTAACTGAGAAACTTGCTTCAAATAGGGCCAGTAAAATGAAGCCCCAATT
GAAGTAAAATGCATATATAAAAAATGAAACTGTGACCGATTTTAAGGACAGTATTGGCAAATATTTCTGTGCTCTTGGAGGAGAAGACCCTTATTGGCAT
GACATGTCAGAAACCACAATGAAAGAATTATTTTAACTTGCATTCATAAAAATTAAAATTATTCATTAAAAACATCGTGAATGAAATTAAAAGTCAAAAT
GTAAGCCAGAAAATTATTTACAACGTATGTGTCAGGAAAAGACAATACCCTTCAAACTTTGAGAGTTTACATCAGAAAGAAAACAGCAAATGACATGATC
CAAACTTGATAAAGGACATGAAAAAGAGCCAGCACTTAGTATGTTTTCTGAATGAATAAGTAGCCAACAGCACATGAAAATGCGTGTAATCCATTTGTAA
GCAGAGAAATGCAAACTAAAACAGTAAAGTGTCATTTTCACTTCCTGG

Expression



Full and truncated open reading frames discovered in TCONS_00253752

In silico ORF/peptide predictions
Nothing found.


RiboTaper predictions from Ribo-Seq data (HEK293 cell line)
Nothing found.

BLAST search results

No hits found.