Detailed information on ENST00000466893

lncRNA-RNA interactions

Number of interactions: 3

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
ENST00000474889 protein tyrosine phosphatase, receptor t... protein coding ENST00000466893 797 287 CDS Cis
ENST00000475012 protein tyrosine phosphatase, receptor t... processed transcript ENST00000466893 797 287 noncoding Cis
ENST00000618938 protein tyrosine phosphatase, receptor t... protein coding ENST00000466893 797 287 CDS Cis

Sequence

>ENST00000466893 (823 nt)
GTGAGGTGTAGTCGCGGCAACCAGGAGGTGCACCCACCACTAGAATTTGAACATCCTAAGAACAGGTATTTTTGTCTCTGCTTTGCTGATGTATCCTCAG<br />CAACCGGAACTGCCTGACATGTCTGTGATAGCTGCCCTTCTCATTATATTGCCCACAGCTGATCCTTTCTGTGAGACACCAGGCTGTTGAGGAAGAATCT<br />ATGGCAACATTGTATCTATTAATATACAGCTTCTGTATTTATCAGGCAATGGTGCAAGACCCACTCGAGCACGCTCAGCTATCATATGGAAAAAACAAAA<br />ACACCACATTTGCCTTATTATACACACAGAACCAACAGCTCTTTCTGAGATTTGCTTGATGAATAACATATCCTCCTGGCTTCCCTTTCTAAGACTTATC<br />TATATTTTTAAACAAGCTAAAGTGTTATCAGCTGAGGCAGAATGTAAAATGAAATTTTGCTGCACATACCCAGAAGGACACAGGCATTGTAGGAATACAG<br />TTTTACTGTGGGAGAGATTTTTACAGCAGATCAATAACAGAATACTTTATATGGACACAACAGAGGATTTTAGATAACTTTTGACTCTAGTTTGTTATTC<br />CTACAATTATACCAACATATACTTTGTCCTTTTACCAACCCCTTTCTCCATGTCTTTCTGCTCATGATGGTCTTAGAAAAGAGTGGCCTTTTTCATTAGA<br />GATAAATCTCCCAAATGATCACCCATGTCTATGCCTACAGCACACAGACAGCATCCTCTGCAATGTCCTTAGCTATTTATACAAAGGTCACCACCAATCA<br />ACAGTGCCTTGATCTCAATAGCC

Expression



Full and truncated open reading frames discovered in ENST00000466893

In silico ORF/peptide predictions
>peptide 1 (72 aa)
MNNISSWLPFLRLIYIFKQAKVLSAEAECKMKFCCTYPEGHRHCRNTVLLWERFLQQINNRILYMDTTEDFR

>peptide 2 (52 aa)
MATLYLLIYSFCIYQAMVQDPLEHAQLSYGKNKNTTFALLYTQNQQLFLRFA


RiboTaper predictions from Ribo-Seq data (HEK293 cell line)
Nothing found.

BLAST search results

Best hit to NONCODE v4:
NONHSAT090182 (Evalue: 0)