Detailed information on ENST00000467138

lncRNA-RNA interactions

Number of interactions: 16

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
ENST00000467462 inter-alpha-trypsin inhibitor heavy chain family, member 4 processed transcript ENST00000467138 515 298 noncoding Trans
ENST00000513738 poly (ADP-ribose) polymerase family, member 8 protein coding ENST00000467138 535 242 CDS Trans
ENST00000517408 antisense antisense ENST00000467138 532 297 noncoding Trans
ENST00000521027 pleckstrin and Sec7 domain containing 3 protein coding ENST00000467138 555 298 CDS_UTR Trans
ENST00000549365 DNA-damage regulated autophagy modulator 1 nonsense mediated decay ENST00000467138 540 298 CDS_UTR Trans
ENST00000572705 transient receptor potential cation channel, subfamily V, member 1 protein coding ENST00000467138 610 304 UTR3 Trans
ENST00000620139 melanoregulin protein coding ENST00000467138 532 298 UTR3 Trans
TCONS_00032151 long intergenic non-protein coding RNA 959 novel protein coding ENST00000467138 522 270 UTR5 Trans
TCONS_00107851 transient receptor potential cation channel, subfamily V, member 1 novel protein coding ENST00000467138 610 304 UTR3 Trans
TCONS_00109011 trans-golgi network vesicle protein 23 homolog C (S. cerevisiae) novel protein coding ENST00000467138 543 298 UTR5 Trans
TCONS_00119961 ring finger protein 152 novel protein coding ENST00000467138 607 300 UTR5 Trans
TCONS_00148387 reticulon 4 novel protein coding ENST00000467138 603 300 UTR3 Trans
TCONS_00148389 reticulon 4 novel protein coding ENST00000467138 603 300 UTR3 Trans
TCONS_00186316 KIAA0232 novel protein coding ENST00000467138 602 298 UTR3 Trans
TCONS_00203663 ribosomal protein L3 pseudogene 6 novel protein coding ENST00000467138 527 305 UTR3 Trans
TCONS_00221037 POU class 6 homeobox 2 novel noncoding ENST00000467138 623 293 noncoding Trans

Sequence

>TCONS_00221037 (2765 nt)
TTTGTTCCTTCATCACCCTGGCCAGGCTGAGGTCCAGGCAGTGTTCTCTGACGGAGCTGTCTCTTTGCACACGAGGAGCCTGAAATATGGAAAAGTAAGT
CGGGCTCTTGATGTTCCTGTTTGCTGACTGAGACTACAAGGCTATTTTTGAATCCCCATAGCTCTCTGGAATTCTGGCCTAAAGAACCCCAGTAGCTAAG
CATTAATAGAGGCTGGCATCCCACAAACTGATCGTGTTCCTTAAACGTAACATCAGGACGGTCAGGGTTCACAGGGTCATGGGTCAGTAGCCTTGTAAAG
AACAAGTTTTATCCTTTTTCTCCAAGGAGACTGACTTTCACCAGAAGAGCCCCTCCAACTGTGGGCTGGGAGGTGCAGCTGTCTCTCTTCCTCCAGGGGG
CGCTGCAGCTCAGCACTGGGGCTGAGGCTGTCCTGGGAACAAAGGCAGGCTGGGTCTGGTTAAACAGCCCTTAGACAAACGTCCAATCAGTCCAGTGGAT
GTTATTGCTGGCAAAGCTTGCTCTGTCATCTGAGCCTCTAAATGGAATTTCACTGCTTTTCTTGTACGAGGTTGCATTATTGAAGCTATTTACTATTTTA
AGGAGAGCATACTTCCTAAAACAAATTAGGATTTACTAGTCTCTTAGCTTTATCTGGGTGAACGTTTTTATTTTCTGAGTGGAACAAAAACCTCTTCCCT
TAATGGAGTGGCTGCAGACAGCCACGTTGATGTACATGGAGTAGGCAGAGGACTGCTGCAGTATGCTGACTTTCACAACCCTGGGTCCTGCGGACTCTTC
CTTGGCAGGACGTGGACTTGAGCTGTCCTGCCAGGACCAGACATGGATTTGCACCCAGCTCCACCCATCTCCTTACCTACCCAGAGGCACACATCTCACA
GGCAAGATGAGTGTTTGGGGTTCAGGTATGAGCTAGGGTCATGGAACAACGCAGTGCTCCTGGGCCAGCAGGAGGCTCCAGCTCACTTCCTCATTGGCTT
CAGCTTCTCTAATGTCTGGCACATGAGTTCTGGCTTAGAGTGCAAGGAAGACTGCAAAGGGAAATGACAGAGAAGAGTATTGAAGGTCACCTTCTGCTGG
GATGTATGAATAGCCTCTGAGTCCCAAAGCGTTCTCTGCAAAAATGTGTACTATGTGTATGCATGTAGGCGACAGCAATTATAAACAGGAAGGACACCAA
TTTGAATATACTTAGGATGTATATTCTGTAGTCTCCTTTTCATTCATCCCGCCAATCTTGCAGTGACCTAGCTTCGTGATATATTTCTTTAGCTAGGTCA
GGGGGTTTTGGTCCAGGTTTCCCCCTCCCTGGTGAAACGGCAGAAGACCCACTTTCATGATTTGCCATGTGGTGCCTCAGTGATTCTCGGTAACAACGGC
TTCATCTGGATTTACCCAACACCTGAGCACAAAGAAGAGGAAGCAGGGGGCTTCATTGCAAACCTGGAGCCTGTCTCTCTTGCTGATCGAGAGGTGATAT
CCCGGCTTCGGAACTGCATCATCTCGCTGGTAACTCAGAGGATGATGCTGTATGATACCAGCATCCTGTACTGCTATGAAGCATCCCTTCCACATCAGAT
CAAAGACATCTTAAAGCCAGAAATAATGGAGGAGATTGTGATGGAAACACGCCAGAGGCTTTTGGAACAGGAGGGATAAGGAGGTGCTCCAGAAGCACGG
GACTGTGGACCTTGCAGGAGTGAAGACTGTGATGTGTGGTCCCCATATGTGGCTCAGCAAAGACTCGAGAGATCATCCCTTTGTCTGCATTGACGGCCCT
GTGACGGCCTCCAGCCCACAGGCCTGCTTTCTCCTGTCCTAACACCAAGCCTGGGTGGCAGATGAACAGTGCTTCCTTGGGTTGCCAGCTGAGTCCCGGT
ATTAGGGAATAGTTTCAGCTCTTTCAAAGTGCACAGTGTTACAGTCGAATGGGCTCCCATCCTGGAATAATATGGAGAATCCTTTGTCTTCCACTCACTG
TCATTCACAAGGCACAGTGCCCCATGAAATTGCCCCAATAGAAAACATGGCATCCCTGACCTCCAAATGGTCTGTTTTGGCCTCCATTCCTATATCCTTT
AAATGACTGAGAATGCAGCTGGTAAAGTTGGAAGAATAAAGTTAACCAAGCAGGCCAGGCACGGTGGCTCACGCCTATAATCCCAGCACTTAGGGAGGCC
AAGGCGGGCAGATCACCTGAGGTCAATAGTTCGAGACCAGCCTGGCCAACAAGGTGAAACCCCATCTCTACTAAAAATACAAAAAATTAGCCAGGTGTGG
TGGTGTGCACCTGTAGTCCCAGCTATTTGGGAGGCTGAGGTGGGAGAATCACTTGAACCTGGGAGGCGGAGGTTGCAGTGAGCTGAAATCGCGTACCACA
CTCCAGCCTGGGTGACAGAGCGAGACTGTGTTTCAAAGAAAAAAAAAAACAAGCAGCCTTTTGCTTGGTTGGAATCTGATTTTCTGTTGCGTGTTCCTTG
TAGCCATAGATGTGATTATGTCCACACCGGGCTGCCTTAATCTGTCCTGCTTGGAGAGTGACTTGTAAGATGCTGAATTATTCATGATAATACAGTGAAT
GTTCTGGGTCCATGTACTCAGATAAACATGAAGAAAATAAGCAAAGAAAAATGGAGACTGGGAAAGCAAAGCTGTTTTCATCCTATAATTGAAGTAGTGT
GGAGCATTAACTTGTGGATGATTCAGAGTTAAAAGATAAAAAGACGCCAGAGTTCTCGCTGAAGAA

Expression



Full and truncated open reading frames discovered in TCONS_00221037

In silico ORF/peptide predictions
Nothing found.


RiboTaper predictions from Ribo-Seq data (HEK293 cell line)
Nothing found.

BLAST search results

No hits found.